Variant report

Variant	rs41439948
Chromosome Location	chr6:109812796-109812797
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:109804488..109806145-chr6:109811754..109813384,2	K562	blood:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs1321329	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1406898	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1535419	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1535420	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1570391	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17070494	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes]
rs17070632	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17070657	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17070666	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17070692	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17070701	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17070705	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17070733	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17070737	1.00[CEU][hapmap];0.82[JPT][hapmap];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17070740	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17070743	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17070774	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17070803	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.86[EUR][1000 genomes]
rs17070833	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2273896	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2356818	0.86[EUR][1000 genomes]
rs3778479	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3799836	0.86[EUR][1000 genomes]
rs3799844	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3799848	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3823233	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4454171	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs57181024	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57996937	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58273806	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58630019	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58731181	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs59203807	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59579490	0.83[ASN][1000 genomes]
rs59626863	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60108304	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60927725	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61374793	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61522207	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61671496	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6905490	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73520933	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9487130	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9487131	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9487143	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9791294	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.88[ASN][1000 genomes]

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109804400-109814200	Weak transcription	Gastric	stomach
2	chr6:109805000-109817000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:109807400-109812800	Weak transcription	Placenta	Placenta
4	chr6:109811400-109813600	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr6:109811600-109813200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
6	chr6:109811600-109813400	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr6:109811600-109813400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr6:109811600-109813400	Enhancers	Primary T cells from cord blood	blood
9	chr6:109811600-109813600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr6:109811600-109813600	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr6:109811600-109813600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
12	chr6:109811600-109813600	Enhancers	Fetal Thymus	thymus
13	chr6:109811600-109815000	Weak transcription	Primary B cells from peripheral blood	blood
14	chr6:109811800-109813200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr6:109811800-109813400	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr6:109811800-109813400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
17	chr6:109811800-109813400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr6:109811800-109813600	Enhancers	Primary T helper cells fromperipheralblood	blood
19	chr6:109812000-109812800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr6:109812000-109813000	Enhancers	Primary hematopoietic stem cells short term culture	blood
21	chr6:109812000-109813400	Enhancers	H9 Cell Line	embryonic stem cell
22	chr6:109812000-109813400	Enhancers	Primary T cells fromperipheralblood	blood
23	chr6:109812000-109813400	Enhancers	Primary T helper naive cells from peripheral blood	blood
24	chr6:109812000-109813400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
25	chr6:109812000-109813400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
26	chr6:109812000-109813400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
27	chr6:109812000-109813400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
28	chr6:109812000-109813400	Enhancers	Primary T killer memory cells from peripheral blood	blood
29	chr6:109812000-109813400	Enhancers	Thymus	Thymus
30	chr6:109812000-109813400	Flanking Active TSS	Dnd41	blood
31	chr6:109812000-109813400	Enhancers	K562	blood
32	chr6:109812000-109813600	Enhancers	H1 Cell Line	embryonic stem cell
33	chr6:109812000-109813600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
34	chr6:109812000-109813600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr6:109812000-109816800	Enhancers	HUES48 Cell Line	embryonic stem cell
36	chr6:109812200-109813200	Enhancers	GM12878-XiMat	blood
37	chr6:109812200-109813400	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr6:109812200-109813400	Enhancers	Primary B cells from cord blood	blood
39	chr6:109812200-109813400	Enhancers	Primary hematopoietic stem cells	blood
40	chr6:109812200-109813400	Enhancers	Fetal Muscle Leg	muscle
41	chr6:109812400-109812800	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
42	chr6:109812400-109812800	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
43	chr6:109812400-109812800	Enhancers	Brain Angular Gyrus	brain
44	chr6:109812400-109812800	Enhancers	Fetal Kidney	kidney
45	chr6:109812400-109813200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
46	chr6:109812400-109813400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr6:109812400-109813400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
48	chr6:109812400-109813400	Enhancers	Pancreatic Islets	Pancreatic Islet
49	chr6:109812400-109813400	Enhancers	HSMM	muscle
50	chr6:109812400-109813400	Enhancers	HSMMtube	muscle

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