Variant report

Variant	rs3799836
Chromosome Location	chr6:109693496-109693497
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:109667580..109670112-chr6:109691835..109693593,2	MCF-7	breast:
2	chr6:109692038..109693795-chr6:110710015..110712493,2	K562	blood:
3	chr6:109626552..109629448-chr6:109691931..109694820,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CD164-1	chr6:109691614-109694072	NONHSAT114396

Variant related genes	Relation type
ENSG00000201023	Chromatin interaction

rs_ID	r²[population]
rs1406898	0.86[EUR][1000 genomes]
rs1570391	0.86[EUR][1000 genomes]
rs17070494	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17070632	0.86[EUR][1000 genomes]
rs17070657	0.86[EUR][1000 genomes]
rs17070666	0.86[EUR][1000 genomes]
rs17070692	0.86[EUR][1000 genomes]
rs17070701	0.86[EUR][1000 genomes]
rs17070705	0.86[EUR][1000 genomes]
rs2273896	0.86[EUR][1000 genomes]
rs2356818	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3778479	0.86[EUR][1000 genomes]
rs41439948	0.86[EUR][1000 genomes]
rs57996937	0.86[EUR][1000 genomes]
rs58273806	0.86[EUR][1000 genomes]
rs58630019	0.80[EUR][1000 genomes]
rs60108304	0.86[EUR][1000 genomes]
rs6905490	0.86[EUR][1000 genomes]
rs73520933	0.86[EUR][1000 genomes]
rs9487130	0.86[EUR][1000 genomes]
rs9487131	0.86[EUR][1000 genomes]
rs9487143	0.86[EUR][1000 genomes]

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109675000-109694400	Strong transcription	Rectal Mucosa Donor 29	rectum
2	chr6:109675000-109694600	Strong transcription	Primary T cells fromperipheralblood	blood
3	chr6:109675000-109700800	Strong transcription	Placenta	Placenta
4	chr6:109676800-109693800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr6:109677000-109698200	Strong transcription	Fetal Intestine Large	intestine
6	chr6:109677600-109695000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr6:109677800-109700600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr6:109678200-109694600	Strong transcription	Fetal Thymus	thymus
9	chr6:109678200-109695200	Strong transcription	Duodenum Mucosa	Duodenum
10	chr6:109678400-109694400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr6:109678400-109694400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr6:109678800-109695400	Strong transcription	Rectal Mucosa Donor 31	rectum
13	chr6:109678800-109699000	Strong transcription	Dnd41	blood
14	chr6:109679200-109700400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr6:109679400-109700600	Strong transcription	HUES6 Cell Line	embryonic stem cell
16	chr6:109680400-109697200	Weak transcription	Fetal Brain Male	brain
17	chr6:109680600-109700600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr6:109680800-109694400	Strong transcription	Primary B cells from peripheral blood	blood
19	chr6:109682600-109700800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
20	chr6:109683200-109699800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
21	chr6:109683800-109700600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr6:109684000-109694600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr6:109684000-109694600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr6:109684000-109694600	Weak transcription	Aorta	Aorta
25	chr6:109684000-109694600	Weak transcription	Fetal Heart	heart
26	chr6:109684000-109694600	Weak transcription	Gastric	stomach
27	chr6:109684000-109694600	Weak transcription	Ovary	ovary
28	chr6:109684000-109694600	Weak transcription	Pancreas	Pancrea
29	chr6:109684000-109694800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr6:109684000-109695400	Weak transcription	Placenta Amnion	Placenta Amnion
31	chr6:109684000-109695800	Weak transcription	Spleen	Spleen
32	chr6:109684000-109702400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr6:109684200-109693600	Strong transcription	Fetal Muscle Trunk	muscle
34	chr6:109684200-109694600	Weak transcription	Brain Hippocampus Middle	brain
35	chr6:109684200-109694600	Weak transcription	Lung	lung
36	chr6:109684200-109695600	Weak transcription	Small Intestine	intestine
37	chr6:109684400-109702400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr6:109684600-109700200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr6:109684600-109700400	Strong transcription	H1 Cell Line	embryonic stem cell
40	chr6:109684800-109694600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr6:109684800-109700200	Strong transcription	HUES64 Cell Line	embryonic stem cell
42	chr6:109685000-109694600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr6:109685000-109694600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
44	chr6:109685800-109700600	Strong transcription	HUES48 Cell Line	embryonic stem cell
45	chr6:109686400-109699000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
46	chr6:109686600-109700200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr6:109686800-109700200	Strong transcription	HSMM	muscle
48	chr6:109687000-109695800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
49	chr6:109687200-109694600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr6:109687400-109699200	Strong transcription	HMEC	breast

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