The 2.0 version of rSNPBase

Variant report

Variant rs17132480
Chromosome Location chr5:114546116-114546117
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:86 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:114523400-114576200 Weak transcription Psoas Muscle Psoas
2 chr5:114528000-114563000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
3 chr5:114529200-114562600 Weak transcription Brain Inferior Temporal Lobe brain
4 chr5:114529800-114551000 Weak transcription Left Ventricle heart
5 chr5:114530200-114562600 Weak transcription Sigmoid Colon Sigmoid Colon
6 chr5:114530200-114562600 Weak transcription Stomach Smooth Muscle stomach
7 chr5:114530600-114548600 Weak transcription Fetal Intestine Large intestine
8 chr5:114530600-114594400 Weak transcription Pancreas Pancrea
9 chr5:114530800-114548000 Weak transcription Adipose Nuclei Adipose
10 chr5:114530800-114565200 Weak transcription NHDF-Ad bronchial
11 chr5:114531000-114546400 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
12 chr5:114531000-114547600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
13 chr5:114531000-114551200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
14 chr5:114531000-114558800 Weak transcription Cortex derived primary cultured neurospheres brain
15 chr5:114531200-114546400 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
16 chr5:114531200-114548200 Weak transcription Rectal Mucosa Donor 29 rectum
17 chr5:114532000-114547000 Weak transcription Rectal Mucosa Donor 31 rectum
18 chr5:114533600-114551200 Weak transcription HSMM muscle
19 chr5:114533800-114549000 Weak transcription Aorta Aorta
20 chr5:114535200-114551200 Weak transcription HSMMtube muscle
21 chr5:114536000-114556000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
22 chr5:114538200-114548600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
23 chr5:114538200-114551800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
24 chr5:114538400-114548000 Weak transcription Fetal Muscle Trunk muscle
25 chr5:114538400-114548200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
26 chr5:114538400-114567000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
27 chr5:114538400-114572000 Weak transcription Lung lung
28 chr5:114538600-114555200 Weak transcription Placenta Placenta
29 chr5:114538800-114550800 Weak transcription Fetal Stomach stomach
30 chr5:114539200-114580200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
31 chr5:114539400-114547400 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
32 chr5:114539400-114548000 Weak transcription Primary T helper cells PMA-I stimulated --
33 chr5:114539800-114566000 Weak transcription ES-WA7 Cell Line embryonic stem cell
34 chr5:114540200-114546800 Weak transcription HMEC breast
35 chr5:114540800-114567600 Weak transcription Hela-S3 cervix
36 chr5:114541000-114562000 Weak transcription Primary T killer memory cells from peripheral blood blood
37 chr5:114541200-114548000 Weak transcription Duodenum Mucosa Duodenum
38 chr5:114541400-114548200 Weak transcription HUES64 Cell Line embryonic stem cell
39 chr5:114541600-114551200 Weak transcription Fetal Adrenal Gland Adrenal Gland
40 chr5:114541800-114548800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
41 chr5:114541800-114549000 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
42 chr5:114541800-114573400 Weak transcription NHLF lung
43 chr5:114542000-114575800 Weak transcription Small Intestine intestine
44 chr5:114542600-114549000 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
45 chr5:114543200-114548800 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
46 chr5:114543400-114548600 Weak transcription Ovary ovary
47 chr5:114543400-114549800 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
48 chr5:114543600-114548000 Weak transcription Fetal Muscle Leg muscle
49 chr5:114543600-114551200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
50 chr5:114543600-114551200 Weak transcription Pancreatic Islets Pancreatic Islet

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Last update: Aug 31, 2015