Variant report
| Variant | rs73257491 |
|---|---|
| Chromosome Location | chr5:114635785-114635786 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:2)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:2 , 50 per page) page:
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| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | CEBPB | chr5:114635615-114635931 | K562 | blood: | n/a | chr5:114635744-114635755 |
| 2 | CEBPB | chr5:114635581-114635863 | HepG2 | liver: | n/a | chr5:114635744-114635755 |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr5:114631488..114634387-chr5:114634521..114636938,4 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| CCDC112 | TF binding region |
| ENSG00000164221 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:40)
| rs_ID | r2[population] |
|---|---|
| rs17132480 | 0.85[AFR][1000 genomes] |
| rs17137549 | 0.85[AFR][1000 genomes] |
| rs17137556 | 0.85[AFR][1000 genomes] |
| rs17137563 | 0.85[AFR][1000 genomes] |
| rs35940728 | 0.92[AFR][1000 genomes] |
| rs57979677 | 0.82[AFR][1000 genomes] |
| rs58955791 | 0.85[AFR][1000 genomes] |
| rs59891755 | 0.92[AFR][1000 genomes] |
| rs59955726 | 0.85[AFR][1000 genomes] |
| rs60460575 | 0.85[AFR][1000 genomes] |
| rs73253432 | 0.85[AFR][1000 genomes] |
| rs73253434 | 0.85[AFR][1000 genomes] |
| rs73253440 | 0.85[AFR][1000 genomes] |
| rs73253463 | 0.85[AFR][1000 genomes] |
| rs73253466 | 0.85[AFR][1000 genomes] |
| rs73255427 | 0.85[AFR][1000 genomes] |
| rs73255447 | 0.85[AFR][1000 genomes] |
| rs73255479 | 0.85[AFR][1000 genomes] |
| rs73255484 | 0.85[AFR][1000 genomes] |
| rs73255489 | 0.85[AFR][1000 genomes] |
| rs73255491 | 0.85[AFR][1000 genomes] |
| rs73255494 | 0.85[AFR][1000 genomes] |
| rs73255498 | 0.85[AFR][1000 genomes] |
| rs73257403 | 0.82[AFR][1000 genomes] |
| rs73257406 | 0.85[AFR][1000 genomes] |
| rs73257413 | 0.85[AFR][1000 genomes] |
| rs73257425 | 0.85[AFR][1000 genomes] |
| rs73257437 | 0.85[AFR][1000 genomes] |
| rs73257446 | 0.92[AFR][1000 genomes] |
| rs73257462 | 0.92[AFR][1000 genomes] |
| rs73257485 | 0.92[AFR][1000 genomes] |
| rs73257494 | 1.00[AFR][1000 genomes] |
| rs73259410 | 1.00[AFR][1000 genomes] |
| rs73259416 | 1.00[AFR][1000 genomes] |
| rs73259426 | 1.00[AFR][1000 genomes] |
| rs7703973 | 0.85[AFR][1000 genomes] |
| rs7711888 | 0.85[AFR][1000 genomes] |
| rs7724266 | 0.85[AFR][1000 genomes] |
| rs7725609 | 0.85[AFR][1000 genomes] |
| rs7726219 | 0.85[AFR][1000 genomes] |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:114632200-114641800 | Weak transcription | Stomach Mucosa | stomach |
