Variant report

Variant	rs73255447
Chromosome Location	chr5:114559038-114559039
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:114504167..114506745-chr5:114557899..114559969,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000152503	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs17132480	1.00[AFR][1000 genomes]
rs17137549	1.00[AFR][1000 genomes]
rs17137556	1.00[AFR][1000 genomes]
rs17137563	1.00[AFR][1000 genomes]
rs35940728	0.92[AFR][1000 genomes]
rs57979677	0.82[AFR][1000 genomes]
rs58955791	1.00[AFR][1000 genomes]
rs59891755	0.92[AFR][1000 genomes]
rs59955726	1.00[AFR][1000 genomes]
rs60460575	1.00[AFR][1000 genomes]
rs73253428	0.84[AFR][1000 genomes]
rs73253432	1.00[AFR][1000 genomes]
rs73253434	1.00[AFR][1000 genomes]
rs73253440	1.00[AFR][1000 genomes]
rs73253463	1.00[AFR][1000 genomes]
rs73253466	1.00[AFR][1000 genomes]
rs73255427	1.00[AFR][1000 genomes]
rs73255479	1.00[AFR][1000 genomes]
rs73255484	1.00[AFR][1000 genomes]
rs73255489	1.00[AFR][1000 genomes]
rs73255491	1.00[AFR][1000 genomes]
rs73255494	1.00[AFR][1000 genomes]
rs73255498	1.00[AFR][1000 genomes]
rs73257403	0.96[AFR][1000 genomes]
rs73257406	1.00[AFR][1000 genomes]
rs73257411	0.93[AFR][1000 genomes]
rs73257413	1.00[AFR][1000 genomes]
rs73257417	0.93[AFR][1000 genomes]
rs73257425	1.00[AFR][1000 genomes]
rs73257437	1.00[AFR][1000 genomes]
rs73257446	0.92[AFR][1000 genomes]
rs73257462	0.92[AFR][1000 genomes]
rs73257485	0.92[AFR][1000 genomes]
rs73257491	0.85[AFR][1000 genomes]
rs73257494	0.85[AFR][1000 genomes]
rs73259410	0.85[AFR][1000 genomes]
rs73259416	0.85[AFR][1000 genomes]
rs73259426	0.85[AFR][1000 genomes]
rs7703973	1.00[AFR][1000 genomes]
rs7711888	1.00[AFR][1000 genomes]
rs7724266	1.00[AFR][1000 genomes]
rs7725609	1.00[AFR][1000 genomes]
rs7726219	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830454	chr5:114453864-114607159	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1029371	chr5:114541428-114590891	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:114523400-114576200	Weak transcription	Psoas Muscle	Psoas
2	chr5:114528000-114563000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr5:114529200-114562600	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr5:114530200-114562600	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr5:114530200-114562600	Weak transcription	Stomach Smooth Muscle	stomach
6	chr5:114530600-114594400	Weak transcription	Pancreas	Pancrea
7	chr5:114530800-114565200	Weak transcription	NHDF-Ad	bronchial
8	chr5:114538400-114567000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr5:114538400-114572000	Weak transcription	Lung	lung
10	chr5:114539200-114580200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr5:114539800-114566000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr5:114540800-114567600	Weak transcription	Hela-S3	cervix
13	chr5:114541000-114562000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr5:114541800-114573400	Weak transcription	NHLF	lung
15	chr5:114542000-114575800	Weak transcription	Small Intestine	intestine
16	chr5:114543600-114562400	Weak transcription	HUVEC	blood vessel
17	chr5:114543800-114562800	Weak transcription	Colon Smooth Muscle	Colon
18	chr5:114543800-114565400	Weak transcription	Brain Hippocampus Middle	brain
19	chr5:114543800-114577800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr5:114545400-114562400	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr5:114545400-114563200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
22	chr5:114546000-114562600	Weak transcription	GM12878-XiMat	blood
23	chr5:114546000-114563000	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr5:114546600-114560800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr5:114546800-114575600	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr5:114546800-114578000	Strong transcription	Monocytes-CD14+_RO01746	blood
27	chr5:114547600-114563800	Weak transcription	Thymus	Thymus
28	chr5:114547600-114577600	Weak transcription	Placenta Amnion	Placenta Amnion
29	chr5:114547800-114578400	Weak transcription	Esophagus	oesophagus
30	chr5:114547800-114596600	Weak transcription	Brain Germinal Matrix	brain
31	chr5:114548400-114596800	Weak transcription	K562	blood
32	chr5:114548600-114562400	Weak transcription	Fetal Kidney	kidney
33	chr5:114548600-114563000	Weak transcription	Colonic Mucosa	Colon
34	chr5:114548800-114575400	Weak transcription	Brain Substantia Nigra	brain
35	chr5:114549400-114562800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
36	chr5:114549400-114597200	Weak transcription	Aorta	Aorta
37	chr5:114549600-114562000	Weak transcription	Skeletal Muscle Female	skeletal muscle
38	chr5:114549600-114562800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
39	chr5:114549600-114563000	Weak transcription	Ovary	ovary
40	chr5:114549600-114564600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
41	chr5:114549600-114565400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
42	chr5:114549600-114565600	Weak transcription	Osteobl	bone
43	chr5:114549600-114574400	Weak transcription	HMEC	breast
44	chr5:114549800-114562800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
45	chr5:114550200-114568400	Weak transcription	NHEK	skin
46	chr5:114550200-114575400	Weak transcription	Rectal Smooth Muscle	rectum
47	chr5:114550400-114572600	Weak transcription	A549	lung
48	chr5:114550600-114559600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
49	chr5:114550600-114562800	Weak transcription	Brain Anterior Caudate	brain
50	chr5:114552000-114562600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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