Variant report

Variant	rs59891755
Chromosome Location	chr5:114621597-114621598
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:114619634..114629040-chr5:114629951..114633566,14	MCF-7	breast:
2	chr5:114619029..114622106-chr5:114630499..114633053,3	K562	blood:
3	chr5:114618112..114620464-chr5:114620662..114622678,3	K562	blood:
4	chr5:114614199..114617138-chr5:114617359..114621851,4	K562	blood:

Variant related genes	Relation type
ENSG00000164221	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs17132480	0.92[AFR][1000 genomes]
rs17137549	0.92[AFR][1000 genomes]
rs17137556	0.92[AFR][1000 genomes]
rs17137563	0.92[AFR][1000 genomes]
rs35940728	1.00[AFR][1000 genomes]
rs57979677	0.89[AFR][1000 genomes]
rs58955791	0.92[AFR][1000 genomes]
rs59955726	0.92[AFR][1000 genomes]
rs60460575	0.92[AFR][1000 genomes]
rs73253428	0.84[AFR][1000 genomes]
rs73253432	0.92[AFR][1000 genomes]
rs73253434	0.92[AFR][1000 genomes]
rs73253440	0.92[AFR][1000 genomes]
rs73253463	0.92[AFR][1000 genomes]
rs73253466	0.92[AFR][1000 genomes]
rs73255427	0.92[AFR][1000 genomes]
rs73255447	0.92[AFR][1000 genomes]
rs73255479	0.92[AFR][1000 genomes]
rs73255484	0.92[AFR][1000 genomes]
rs73255489	0.92[AFR][1000 genomes]
rs73255491	0.92[AFR][1000 genomes]
rs73255494	0.92[AFR][1000 genomes]
rs73255498	0.92[AFR][1000 genomes]
rs73257403	0.89[AFR][1000 genomes]
rs73257406	0.92[AFR][1000 genomes]
rs73257411	0.86[AFR][1000 genomes]
rs73257413	0.92[AFR][1000 genomes]
rs73257417	0.86[AFR][1000 genomes]
rs73257425	0.92[AFR][1000 genomes]
rs73257437	0.92[AFR][1000 genomes]
rs73257446	1.00[AFR][1000 genomes]
rs73257462	1.00[AFR][1000 genomes]
rs73257485	1.00[AFR][1000 genomes]
rs73257491	0.92[AFR][1000 genomes]
rs73257494	0.92[AFR][1000 genomes]
rs73259410	0.92[AFR][1000 genomes]
rs73259416	0.92[AFR][1000 genomes]
rs73259426	0.92[AFR][1000 genomes]
rs7703973	0.92[AFR][1000 genomes]
rs7711888	0.92[AFR][1000 genomes]
rs7724266	0.92[AFR][1000 genomes]
rs7725609	0.92[AFR][1000 genomes]
rs7726219	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv968978	chr5:114620599-114625007	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:114599000-114624000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr5:114599000-114626600	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr5:114599000-114630800	Weak transcription	Psoas Muscle	Psoas
4	chr5:114599000-114631200	Weak transcription	Primary hematopoietic stem cells	blood
5	chr5:114599000-114631200	Weak transcription	HSMM	muscle
6	chr5:114599000-114631400	Weak transcription	Left Ventricle	heart
7	chr5:114599200-114622000	Weak transcription	Colon Smooth Muscle	Colon
8	chr5:114599200-114631200	Weak transcription	Rectal Smooth Muscle	rectum
9	chr5:114599400-114621800	Weak transcription	Brain Angular Gyrus	brain
10	chr5:114601200-114631200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr5:114601200-114631400	Weak transcription	Aorta	Aorta
12	chr5:114602800-114621800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr5:114604000-114622400	Weak transcription	NHDF-Ad	bronchial
14	chr5:114604000-114630600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr5:114610800-114621800	Weak transcription	Brain Hippocampus Middle	brain
16	chr5:114611200-114621800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr5:114611200-114622000	Weak transcription	Adipose Nuclei	Adipose
18	chr5:114611200-114622000	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr5:114611200-114630400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr5:114611200-114630400	Weak transcription	Duodenum Mucosa	Duodenum
21	chr5:114611200-114630800	Weak transcription	Stomach Smooth Muscle	stomach
22	chr5:114611400-114624200	Weak transcription	Monocytes-CD14+_RO01746	blood
23	chr5:114611400-114627600	Weak transcription	Primary B cells from cord blood	blood
24	chr5:114611400-114628600	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr5:114611600-114622200	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr5:114611600-114623200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr5:114612400-114621600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr5:114612400-114625000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr5:114612800-114622400	Weak transcription	HUES64 Cell Line	embryonic stem cell
30	chr5:114612800-114630200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
31	chr5:114620000-114622800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr5:114620800-114621600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr5:114621000-114622000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr5:114621200-114622400	Enhancers	Primary monocytes fromperipheralblood	blood
35	chr5:114621400-114621600	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr5:114621400-114622000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr5:114621400-114622000	Enhancers	Cortex derived primary cultured neurospheres	brain
38	chr5:114621400-114622200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
39	chr5:114621400-114628600	Weak transcription	Sigmoid Colon	Sigmoid Colon

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