Variant report

Variant	rs73257403
Chromosome Location	chr5:114585505-114585506
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:114580828..114583990-chr5:114584401..114587241,3	K562	blood:
2	chr5:114585052..114588251-chr5:114594409..114598098,3	MCF-7	breast:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs17132480	0.96[AFR][1000 genomes]
rs17137549	0.96[AFR][1000 genomes]
rs17137556	0.96[AFR][1000 genomes]
rs17137563	0.96[AFR][1000 genomes]
rs35940728	0.89[AFR][1000 genomes]
rs58955791	0.96[AFR][1000 genomes]
rs59891755	0.89[AFR][1000 genomes]
rs59955726	0.96[AFR][1000 genomes]
rs60460575	0.96[AFR][1000 genomes]
rs73253428	0.81[AFR][1000 genomes]
rs73253432	0.96[AFR][1000 genomes]
rs73253434	0.96[AFR][1000 genomes]
rs73253440	0.96[AFR][1000 genomes]
rs73253463	0.96[AFR][1000 genomes]
rs73253466	0.96[AFR][1000 genomes]
rs73255427	0.96[AFR][1000 genomes]
rs73255447	0.96[AFR][1000 genomes]
rs73255479	0.96[AFR][1000 genomes]
rs73255484	0.96[AFR][1000 genomes]
rs73255489	0.96[AFR][1000 genomes]
rs73255491	0.96[AFR][1000 genomes]
rs73255494	0.96[AFR][1000 genomes]
rs73255498	0.96[AFR][1000 genomes]
rs73257406	0.96[AFR][1000 genomes]
rs73257411	0.89[AFR][1000 genomes]
rs73257413	0.96[AFR][1000 genomes]
rs73257417	0.89[AFR][1000 genomes]
rs73257425	0.96[AFR][1000 genomes]
rs73257437	0.96[AFR][1000 genomes]
rs73257446	0.89[AFR][1000 genomes]
rs73257462	0.89[AFR][1000 genomes]
rs73257485	0.89[AFR][1000 genomes]
rs73257491	0.82[AFR][1000 genomes]
rs73257494	0.82[AFR][1000 genomes]
rs73259410	0.82[AFR][1000 genomes]
rs73259416	0.82[AFR][1000 genomes]
rs73259426	0.82[AFR][1000 genomes]
rs7703973	0.96[AFR][1000 genomes]
rs7711888	0.96[AFR][1000 genomes]
rs7724266	0.96[AFR][1000 genomes]
rs7725609	0.96[AFR][1000 genomes]
rs7726219	0.96[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830454	chr5:114453864-114607159	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1029371	chr5:114541428-114590891	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:114530600-114594400	Weak transcription	Pancreas	Pancrea
2	chr5:114547800-114596600	Weak transcription	Brain Germinal Matrix	brain
3	chr5:114548400-114596800	Weak transcription	K562	blood
4	chr5:114549400-114597200	Weak transcription	Aorta	Aorta
5	chr5:114559000-114587600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr5:114563400-114591600	Weak transcription	Brain Anterior Caudate	brain
7	chr5:114563400-114597600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr5:114565200-114597400	Weak transcription	Colonic Mucosa	Colon
9	chr5:114567400-114590600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr5:114567800-114589800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr5:114573400-114586000	Weak transcription	A549	lung
12	chr5:114573800-114586000	Weak transcription	Brain Angular Gyrus	brain
13	chr5:114575000-114597000	Weak transcription	Fetal Stomach	stomach
14	chr5:114575800-114597000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr5:114576000-114596800	Weak transcription	Fetal Kidney	kidney
16	chr5:114576000-114596800	Weak transcription	Rectal Smooth Muscle	rectum
17	chr5:114576200-114591000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr5:114576200-114596000	Weak transcription	Hela-S3	cervix
19	chr5:114576200-114596800	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr5:114576400-114590600	Weak transcription	Ovary	ovary
21	chr5:114576400-114594400	Weak transcription	Lung	lung
22	chr5:114576600-114586400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
23	chr5:114576600-114590800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr5:114576600-114593000	Weak transcription	HSMMtube	muscle
25	chr5:114576600-114596200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr5:114576600-114596400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr5:114576600-114597000	Weak transcription	Brain Substantia Nigra	brain
28	chr5:114576800-114591600	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr5:114576800-114596000	Weak transcription	NHDF-Ad	bronchial
30	chr5:114576800-114596400	Weak transcription	Fetal Lung	lung
31	chr5:114576800-114597000	Weak transcription	Thymus	Thymus
32	chr5:114576800-114597400	Weak transcription	Fetal Muscle Trunk	muscle
33	chr5:114577000-114590800	Weak transcription	Rectal Mucosa Donor 31	rectum
34	chr5:114577000-114591600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
35	chr5:114577000-114591800	Weak transcription	Psoas Muscle	Psoas
36	chr5:114577000-114596800	Weak transcription	HUES48 Cell Line	embryonic stem cell
37	chr5:114577000-114596800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
38	chr5:114577000-114597200	Weak transcription	Placenta	Placenta
39	chr5:114577200-114595400	Weak transcription	Dnd41	blood
40	chr5:114577200-114596800	Weak transcription	Rectal Mucosa Donor 29	rectum
41	chr5:114577400-114591400	Weak transcription	Adipose Nuclei	Adipose
42	chr5:114577400-114596800	Weak transcription	HUES64 Cell Line	embryonic stem cell
43	chr5:114577600-114586000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr5:114577600-114586400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr5:114577600-114588400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
46	chr5:114577600-114591600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr5:114577600-114594400	Weak transcription	Primary neutrophils fromperipheralblood	blood
48	chr5:114577800-114586200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
49	chr5:114577800-114594000	Weak transcription	Primary T cells from cord blood	blood
50	chr5:114578000-114585800	Weak transcription	Primary T helper cells PMA-I stimulated	--

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