Variant report

Variant	rs73257485
Chromosome Location	chr5:114629320-114629321
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:114623240..114626730-chr5:114627807..114632536,6	MCF-7	breast:
2	chr5:114626278..114629451-chr5:114630853..114633217,3	K562	blood:
3	chr5:114626278..114630090-chr5:114630456..114633226,5	K562	blood:
4	chr5:114590810..114593401-chr5:114627414..114629564,2	MCF-7	breast:
5	chr5:114627696..114629421-chr5:114959972..114962333,2	K562	blood:

Variant related genes	Relation type
ENSG00000251201	Chromatin interaction
ENSG00000250197	Chromatin interaction
ENSG00000243414	Chromatin interaction
ENSG00000134970	Chromatin interaction
ENSG00000164221	Chromatin interaction

rs_ID	r²[population]
rs17132480	0.92[AFR][1000 genomes]
rs17137549	0.92[AFR][1000 genomes]
rs17137556	0.92[AFR][1000 genomes]
rs17137563	0.92[AFR][1000 genomes]
rs35940728	1.00[AFR][1000 genomes]
rs57979677	0.89[AFR][1000 genomes]
rs58955791	0.92[AFR][1000 genomes]
rs59891755	1.00[AFR][1000 genomes]
rs59955726	0.92[AFR][1000 genomes]
rs60460575	0.92[AFR][1000 genomes]
rs73253428	0.84[AFR][1000 genomes]
rs73253432	0.92[AFR][1000 genomes]
rs73253434	0.92[AFR][1000 genomes]
rs73253440	0.92[AFR][1000 genomes]
rs73253463	0.92[AFR][1000 genomes]
rs73253466	0.92[AFR][1000 genomes]
rs73255427	0.92[AFR][1000 genomes]
rs73255447	0.92[AFR][1000 genomes]
rs73255479	0.92[AFR][1000 genomes]
rs73255484	0.92[AFR][1000 genomes]
rs73255489	0.92[AFR][1000 genomes]
rs73255491	0.92[AFR][1000 genomes]
rs73255494	0.92[AFR][1000 genomes]
rs73255498	0.92[AFR][1000 genomes]
rs73257403	0.89[AFR][1000 genomes]
rs73257406	0.92[AFR][1000 genomes]
rs73257411	0.86[AFR][1000 genomes]
rs73257413	0.92[AFR][1000 genomes]
rs73257417	0.86[AFR][1000 genomes]
rs73257425	0.92[AFR][1000 genomes]
rs73257437	0.92[AFR][1000 genomes]
rs73257446	1.00[AFR][1000 genomes]
rs73257462	1.00[AFR][1000 genomes]
rs73257491	0.92[AFR][1000 genomes]
rs73257494	0.92[AFR][1000 genomes]
rs73259410	0.92[AFR][1000 genomes]
rs73259416	0.92[AFR][1000 genomes]
rs73259426	0.92[AFR][1000 genomes]
rs7703973	0.92[AFR][1000 genomes]
rs7711888	0.92[AFR][1000 genomes]
rs7724266	0.92[AFR][1000 genomes]
rs7725609	0.92[AFR][1000 genomes]
rs7726219	0.92[AFR][1000 genomes]

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:114599000-114630800	Weak transcription	Psoas Muscle	Psoas
2	chr5:114599000-114631200	Weak transcription	Primary hematopoietic stem cells	blood
3	chr5:114599000-114631200	Weak transcription	HSMM	muscle
4	chr5:114599000-114631400	Weak transcription	Left Ventricle	heart
5	chr5:114599200-114631200	Weak transcription	Rectal Smooth Muscle	rectum
6	chr5:114601200-114631200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr5:114601200-114631400	Weak transcription	Aorta	Aorta
8	chr5:114604000-114630600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr5:114611200-114630400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr5:114611200-114630400	Weak transcription	Duodenum Mucosa	Duodenum
11	chr5:114611200-114630800	Weak transcription	Stomach Smooth Muscle	stomach
12	chr5:114612800-114630200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr5:114621600-114630400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr5:114622400-114630200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr5:114625400-114630600	Weak transcription	Primary monocytes fromperipheralblood	blood
16	chr5:114625400-114630800	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr5:114627000-114631200	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr5:114627400-114630600	Weak transcription	NHLF	lung
19	chr5:114628000-114631200	Weak transcription	Fetal Kidney	kidney
20	chr5:114628200-114629600	ZNF genes & repeats	Fetal Brain Female	brain
21	chr5:114628600-114629400	Enhancers	Sigmoid Colon	Sigmoid Colon
22	chr5:114628600-114629600	ZNF genes & repeats	Brain Germinal Matrix	brain
23	chr5:114628600-114630000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr5:114628600-114630400	Weak transcription	Brain Substantia Nigra	brain
25	chr5:114628600-114630800	Weak transcription	Colonic Mucosa	Colon
26	chr5:114628600-114631200	Enhancers	Rectal Mucosa Donor 31	rectum
27	chr5:114628600-114631400	Weak transcription	Esophagus	oesophagus
28	chr5:114628800-114630600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr5:114629000-114629600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr5:114629000-114630200	Weak transcription	Fetal Brain Male	brain
31	chr5:114629000-114630800	Weak transcription	Primary B cells from cord blood	blood
32	chr5:114629000-114631200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
33	chr5:114629000-114631200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr5:114629200-114630200	Weak transcription	Hela-S3	cervix

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links