Variant report

Variant	rs17154128
Chromosome Location	chr10:44184401-44184402
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:44179123..44180704-chr10:44183987..44185665,2	MCF-7	breast:
2	chr10:44173211..44175756-chr10:44184314..44186963,2	K562	blood:
3	chr10:44183379..44187369-chr10:44190252..44193395,4	MCF-7	breast:
4	chr10:44173211..44175882-chr10:44184314..44186858,2	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10450466	0.84[JPT][hapmap];0.84[ASN][1000 genomes]
rs11238621	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12358200	0.82[CEU][hapmap]
rs17154089	0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs17154099	0.84[JPT][hapmap];0.86[ASN][1000 genomes]
rs17154103	0.84[JPT][hapmap];0.86[ASN][1000 genomes]
rs17154107	0.86[ASN][1000 genomes]
rs17154117	0.85[ASN][1000 genomes]
rs17154131	1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs17154135	1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs4491169	0.84[JPT][hapmap];0.84[ASN][1000 genomes]
rs4614394	0.84[ASN][1000 genomes]
rs57408979	0.86[ASN][1000 genomes]
rs57969344	0.86[ASN][1000 genomes]
rs58757312	0.86[ASN][1000 genomes]
rs61697162	0.86[ASN][1000 genomes]
rs73260785	0.84[ASN][1000 genomes]
rs73262706	0.84[ASN][1000 genomes]
rs73264454	0.84[ASN][1000 genomes]
rs73264491	0.86[ASN][1000 genomes]
rs73266505	0.86[ASN][1000 genomes]
rs7893286	0.86[ASN][1000 genomes]
rs7907742	0.84[JPT][hapmap];0.86[ASN][1000 genomes]
rs878478	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3340045	chr10:44184155-44184491	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44174400-44184600	Weak transcription	Lung	lung
2	chr10:44174400-44185000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr10:44177400-44184600	Weak transcription	Fetal Brain Male	brain
4	chr10:44179600-44184800	Weak transcription	NHDF-Ad	bronchial
5	chr10:44179600-44185000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr10:44179600-44185000	Weak transcription	Osteobl	bone
7	chr10:44181600-44184600	Weak transcription	Fetal Heart	heart
8	chr10:44181600-44184600	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr10:44181600-44185000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr10:44182000-44184600	Weak transcription	Pancreas	Pancrea
11	chr10:44182000-44184800	Weak transcription	Adipose Nuclei	Adipose
12	chr10:44182000-44184800	Weak transcription	Left Ventricle	heart
13	chr10:44182000-44184800	Weak transcription	Right Atrium	heart
14	chr10:44182000-44184800	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr10:44182200-44184800	Weak transcription	Right Ventricle	heart
16	chr10:44183000-44184800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr10:44184000-44184800	Enhancers	NH-A	brain
18	chr10:44184000-44185200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr10:44184200-44184600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr10:44184200-44184800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr10:44184200-44184800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr10:44184200-44186200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
23	chr10:44184400-44184800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr10:44184400-44184800	Enhancers	Placenta Amnion	Placenta Amnion
25	chr10:44184400-44185200	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell

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