Variant report

Variant	rs17154089
Chromosome Location	chr10:44163192-44163193
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:44162351..44163308-chr10:44881741..44882672,2	K562	blood:
2	chr10:44151901..44153868-chr10:44162528..44164728,2	K562	blood:

Variant related genes	Relation type
ENSG00000107562	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10450466	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11238621	0.96[ASN][1000 genomes]
rs17154099	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17154103	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17154107	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17154117	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17154128	0.84[ASN][1000 genomes]
rs17154131	1.00[CHB][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs17154135	1.00[CHB][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs3123663	0.83[ASN][1000 genomes]
rs3128252	0.81[ASN][1000 genomes]
rs3814562	1.00[CEU][hapmap];0.90[JPT][hapmap];1.00[AFR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4491169	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4614394	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57182212	1.00[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs57408979	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57969344	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58593574	1.00[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs58757312	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60643875	1.00[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs60933829	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61697162	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73260785	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73262706	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73264454	1.00[ASN][1000 genomes]
rs73264491	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73266505	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7893286	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7907742	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs878478	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44161800-44163400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
2	chr10:44162000-44163400	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:44162000-44163400	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
4	chr10:44162400-44163200	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
5	chr10:44162600-44163200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
6	chr10:44162600-44163200	Bivalent/Poised TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr10:44162600-44163200	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr10:44162600-44163200	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr10:44162600-44163200	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
10	chr10:44162600-44163200	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
11	chr10:44162600-44163200	Enhancers	Spleen	Spleen
12	chr10:44162600-44163200	Flanking Active TSS	NH-A	brain
13	chr10:44162600-44163200	Active TSS	Osteobl	bone
14	chr10:44162600-44163400	Enhancers	Fetal Heart	heart
15	chr10:44162600-44163400	Bivalent Enhancer	Fetal Lung	lung
16	chr10:44162600-44163600	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
17	chr10:44162600-44163600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
18	chr10:44162800-44163200	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr10:44162800-44163200	Flanking Bivalent TSS/Enh	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr10:44162800-44163200	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
21	chr10:44162800-44163200	Enhancers	Primary hematopoietic stem cells	blood
22	chr10:44162800-44163200	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
23	chr10:44162800-44163200	Bivalent/Poised TSS	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr10:44162800-44163200	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr10:44162800-44163200	Active TSS	Brain Angular Gyrus	brain
26	chr10:44162800-44163200	Bivalent/Poised TSS	Colonic Mucosa	Colon
27	chr10:44162800-44163200	Active TSS	Colon Smooth Muscle	Colon
28	chr10:44162800-44163200	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
29	chr10:44162800-44163200	Flanking Bivalent TSS/Enh	Fetal Brain Female	brain
30	chr10:44162800-44163200	Bivalent/Poised TSS	Fetal Intestine Small	intestine
31	chr10:44162800-44163200	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
32	chr10:44162800-44163200	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
33	chr10:44162800-44163200	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
34	chr10:44162800-44163200	Flanking Bivalent TSS/Enh	Left Ventricle	heart
35	chr10:44162800-44163200	Active TSS	Ovary	ovary
36	chr10:44162800-44163200	Transcr. at gene 5' and 3'	Right Atrium	heart
37	chr10:44162800-44163200	Active TSS	Right Ventricle	heart
38	chr10:44162800-44163200	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
39	chr10:44162800-44163400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
40	chr10:44162800-44163400	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
41	chr10:44162800-44163400	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
42	chr10:44162800-44163400	Active TSS	Brain Anterior Caudate	brain
43	chr10:44162800-44163400	Active TSS	Brain Substantia Nigra	brain
44	chr10:44162800-44163400	Bivalent Enhancer	Placenta	Placenta
45	chr10:44163000-44163200	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
46	chr10:44163000-44163200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr10:44163000-44163200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr10:44163000-44163200	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr10:44163000-44163200	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr10:44163000-44163200	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin03	Skin

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