Variant report

Variant	rs3814562
Chromosome Location	chr10:44141952-44141953
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr10:44141882-44142082	GM12878	blood:	n/a	n/a
2	BACH1	chr10:44141925-44141996	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr10:44140472..44142370-chr10:44143162..44146127,2	MCF-7	breast:
2	chr10:44138867..44141721-chr10:44141933..44143603,2	MCF-7	breast:
3	chr10:43915151..43917098-chr10:44141914..44144023,2	MCF-7	breast:
4	chr10:44121619..44124737-chr10:44140995..44143935,3	K562	blood:

Variant related genes	Relation type
ZNF32	TF binding region
ENSG00000169740	Chromatin interaction
ENSG00000230555	Chromatin interaction
ENSG00000230565	Chromatin interaction
ENSG00000223910	Chromatin interaction
ENSG00000226245	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10450466	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];0.92[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11238621	0.90[ASN][1000 genomes]
rs17154089	1.00[CEU][hapmap];0.90[JPT][hapmap];1.00[AFR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17154099	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];0.92[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17154103	1.00[ASW][hapmap];1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];0.92[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17154107	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17154117	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17154131	0.85[CHB][hapmap]
rs17154135	0.85[CHB][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs4491169	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];0.92[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4614394	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57182212	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57408979	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57969344	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58593574	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs58757312	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60643875	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs60933829	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61697162	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73260785	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73262706	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73264454	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73264491	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73266505	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7893286	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7900342	0.84[JPT][hapmap]
rs7907742	1.00[CEU][hapmap];0.85[CHB][hapmap];0.95[CHD][hapmap];0.94[GIH][hapmap];0.92[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs878478	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44135600-44142800	ZNF genes & repeats	Fetal Brain Female	brain
2	chr10:44136800-44142000	ZNF genes & repeats	Brain Germinal Matrix	brain
3	chr10:44136800-44142000	ZNF genes & repeats	Skeletal Muscle Male	skeletal muscle
4	chr10:44136800-44142200	ZNF genes & repeats	Brain Hippocampus Middle	brain
5	chr10:44136800-44142200	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
6	chr10:44136800-44142400	ZNF genes & repeats	Liver	Liver
7	chr10:44136800-44142400	ZNF genes & repeats	HSMM	muscle
8	chr10:44136800-44143400	ZNF genes & repeats	Fetal Lung	lung
9	chr10:44137000-44142000	ZNF genes & repeats	Brain Substantia Nigra	brain
10	chr10:44137000-44143000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
11	chr10:44137000-44143400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
12	chr10:44137000-44143600	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr10:44137200-44142000	ZNF genes & repeats	Primary B cells from cord blood	blood
14	chr10:44137200-44142200	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
15	chr10:44137200-44142800	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr10:44137200-44143200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr10:44137200-44143200	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr10:44137200-44143400	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
19	chr10:44137400-44142200	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
20	chr10:44137400-44142200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr10:44137400-44142200	ZNF genes & repeats	Brain Anterior Caudate	brain
22	chr10:44137400-44142400	ZNF genes & repeats	Stomach Smooth Muscle	stomach
23	chr10:44137400-44142600	ZNF genes & repeats	Muscle Satellite Cultured Cells	--
24	chr10:44137400-44143200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
25	chr10:44137400-44143200	ZNF genes & repeats	Fetal Kidney	kidney
26	chr10:44137400-44143400	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr10:44137600-44142000	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
28	chr10:44137600-44142200	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr10:44137600-44142400	ZNF genes & repeats	Adipose Nuclei	Adipose
30	chr10:44137600-44142800	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
31	chr10:44137600-44143200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr10:44137600-44143400	ZNF genes & repeats	Fetal Muscle Trunk	muscle
33	chr10:44137800-44142000	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr10:44137800-44142000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
35	chr10:44137800-44142200	ZNF genes & repeats	Duodenum Mucosa	Duodenum
36	chr10:44137800-44142200	ZNF genes & repeats	Psoas Muscle	Psoas
37	chr10:44137800-44142400	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr10:44137800-44142400	ZNF genes & repeats	Ovary	ovary
39	chr10:44137800-44142600	ZNF genes & repeats	Colon Smooth Muscle	Colon
40	chr10:44137800-44142600	ZNF genes & repeats	Fetal Intestine Large	intestine
41	chr10:44137800-44142800	ZNF genes & repeats	Fetal Muscle Leg	muscle
42	chr10:44137800-44143200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
43	chr10:44137800-44143200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr10:44137800-44143600	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr10:44137800-44143800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr10:44137800-44143800	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr10:44138000-44142200	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
48	chr10:44138000-44142400	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr10:44138000-44142400	ZNF genes & repeats	Osteobl	bone
50	chr10:44138000-44143000	ZNF genes & repeats	Primary T cells from cord blood	blood

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