Variant report

Variant	rs7893286
Chromosome Location	chr10:44168749-44168750
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10450466	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11238621	0.99[ASN][1000 genomes]
rs17154089	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17154095	0.88[YRI][hapmap]
rs17154099	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17154103	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17154107	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17154117	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17154128	0.86[ASN][1000 genomes]
rs17154131	1.00[CHB][hapmap];0.85[JPT][hapmap];0.87[ASN][1000 genomes]
rs17154135	1.00[CHB][hapmap];0.85[JPT][hapmap];0.86[ASN][1000 genomes]
rs3123663	0.81[ASN][1000 genomes]
rs3128252	0.86[YRI][hapmap];0.83[ASN][1000 genomes]
rs3814562	1.00[CEU][hapmap];0.85[CHB][hapmap];0.92[JPT][hapmap];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4491169	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4614394	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57182212	0.91[ASN][1000 genomes]
rs57408979	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57969344	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58593574	0.90[ASN][1000 genomes]
rs58757312	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60643875	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs60933829	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61697162	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73260785	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73262706	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73264454	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73264491	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73266505	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7907742	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs878478	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44163400-44176800	Weak transcription	Right Atrium	heart
2	chr10:44167200-44169200	Enhancers	Fetal Muscle Leg	muscle
3	chr10:44167200-44169200	Enhancers	Fetal Stomach	stomach
4	chr10:44167400-44169000	Enhancers	Stomach Smooth Muscle	stomach
5	chr10:44167600-44168800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr10:44167600-44170000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr10:44167600-44170000	Weak transcription	Ovary	ovary
8	chr10:44167600-44170200	Weak transcription	Left Ventricle	heart
9	chr10:44167600-44170200	Weak transcription	Lung	lung
10	chr10:44167600-44170200	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr10:44167600-44174200	Weak transcription	Pancreas	Pancrea
12	chr10:44167600-44175200	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr10:44168000-44169000	Enhancers	Fetal Muscle Trunk	muscle
14	chr10:44168400-44169800	Enhancers	Colon Smooth Muscle	Colon
15	chr10:44168400-44170600	Enhancers	Fetal Brain Male	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links