Variant report

Variant	rs17154131
Chromosome Location	chr10:44185052-44185053
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:44179123..44180704-chr10:44183987..44185665,2	MCF-7	breast:
2	chr10:44173211..44175756-chr10:44184314..44186963,2	K562	blood:
3	chr10:44184901..44186647-chr10:44880289..44882239,2	MCF-7	breast:
4	chr10:44183379..44187369-chr10:44190252..44193395,4	MCF-7	breast:
5	chr10:44173211..44175882-chr10:44184314..44186858,2	K562	blood:

Variant related genes	Relation type
ENSG00000107562	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10450466	1.00[CHB][hapmap];0.85[JPT][hapmap];0.85[ASN][1000 genomes]
rs11238621	0.86[ASN][1000 genomes]
rs17154089	1.00[CHB][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs17154099	1.00[CHB][hapmap];0.85[JPT][hapmap];0.87[ASN][1000 genomes]
rs17154103	1.00[CHB][hapmap];0.85[JPT][hapmap];0.87[ASN][1000 genomes]
rs17154107	0.87[ASN][1000 genomes]
rs17154117	0.86[ASN][1000 genomes]
rs17154128	0.99[ASN][1000 genomes]
rs17154135	0.87[ASW][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[MKK][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3814562	0.85[CHB][hapmap]
rs4491169	1.00[CHB][hapmap];0.85[JPT][hapmap];0.85[ASN][1000 genomes]
rs4614394	0.85[ASN][1000 genomes]
rs57408979	0.87[ASN][1000 genomes]
rs57969344	0.87[ASN][1000 genomes]
rs58757312	0.87[ASN][1000 genomes]
rs60933829	0.81[ASN][1000 genomes]
rs61697162	0.87[ASN][1000 genomes]
rs73260785	0.85[ASN][1000 genomes]
rs73262706	0.85[ASN][1000 genomes]
rs73264454	0.85[ASN][1000 genomes]
rs73264491	0.87[ASN][1000 genomes]
rs73266505	0.87[ASN][1000 genomes]
rs7893286	0.87[ASN][1000 genomes]
rs7907742	1.00[CHB][hapmap];0.85[JPT][hapmap];0.87[ASN][1000 genomes]
rs878478	0.88[ASN][1000 genomes]

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44184000-44185200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr10:44184200-44186200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
3	chr10:44184400-44185200	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
4	chr10:44184600-44185200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
5	chr10:44184600-44185400	Flanking Active TSS	Primary hematopoietic stem cells	blood
6	chr10:44184600-44185400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr10:44184600-44185800	Enhancers	Fetal Brain Male	brain
8	chr10:44184600-44186200	Enhancers	Spleen	Spleen
9	chr10:44184600-44186600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
10	chr10:44184800-44185200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr10:44184800-44185200	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
12	chr10:44184800-44185200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
13	chr10:44184800-44185200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr10:44184800-44185200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr10:44184800-44185200	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr10:44184800-44185200	Enhancers	Aorta	Aorta
17	chr10:44184800-44185200	Flanking Active TSS	Liver	Liver
18	chr10:44184800-44185200	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
19	chr10:44184800-44185200	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
20	chr10:44184800-44185200	Flanking Active TSS	Esophagus	oesophagus
21	chr10:44184800-44185200	Flanking Bivalent TSS/Enh	Fetal Intestine Small	intestine
22	chr10:44184800-44185200	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
23	chr10:44184800-44185200	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
24	chr10:44184800-44185200	Flanking Active TSS	Pancreas	Pancrea
25	chr10:44184800-44185200	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
26	chr10:44184800-44185200	Flanking Active TSS	Right Ventricle	heart
27	chr10:44184800-44185200	Flanking Active TSS	Stomach Smooth Muscle	stomach
28	chr10:44184800-44185200	Bivalent/Poised TSS	K562	blood
29	chr10:44184800-44185200	Enhancers	NHLF	lung
30	chr10:44184800-44185400	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr10:44184800-44185400	Flanking Bivalent TSS/Enh	Primary T cells fromperipheralblood	blood
32	chr10:44184800-44185400	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
33	chr10:44184800-44185400	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
34	chr10:44184800-44185400	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
35	chr10:44184800-44185400	Flanking Active TSS	Fetal Brain Female	brain
36	chr10:44184800-44185600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
37	chr10:44184800-44185600	Flanking Bivalent TSS/Enh	Fetal Thymus	thymus
38	chr10:44184800-44185600	Flanking Active TSS	NH-A	brain
39	chr10:44184800-44185800	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
40	chr10:44184800-44185800	Bivalent/Poised TSS	Thymus	Thymus
41	chr10:44184800-44185800	Active TSS	A549	lung
42	chr10:44184800-44186000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
43	chr10:44184800-44186000	Active TSS	Primary T killer memory cells from peripheral blood	blood
44	chr10:44184800-44186000	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
45	chr10:44184800-44186200	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
46	chr10:44184800-44186200	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr10:44184800-44186200	Active TSS	Primary T helper naive cells fromperipheralblood	blood
48	chr10:44184800-44186200	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
49	chr10:44184800-44186200	Active TSS	Brain Anterior Caudate	brain
50	chr10:44184800-44186200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain

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