Variant report

Variant	rs17154135
Chromosome Location	chr10:44185453-44185454
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:44185445..44186170-chr10:45360180..45360895,2	MCF-7	breast:
2	chr10:44179123..44180704-chr10:44183987..44185665,2	MCF-7	breast:
3	chr10:44173211..44175756-chr10:44184314..44186963,2	K562	blood:
4	chr10:44184901..44186647-chr10:44880289..44882239,2	MCF-7	breast:
5	chr10:44183379..44187369-chr10:44190252..44193395,4	MCF-7	breast:
6	chr10:44185266..44187745-chr10:44193521..44195078,2	MCF-7	breast:
7	chr10:44185406..44187428-chr10:44683706..44685652,2	MCF-7	breast:
8	chr10:44185358..44185925-chr10:44525349..44526293,3	MCF-7	breast:
9	chr10:44185239..44186144-chr10:44525122..44526258,6	MCF-7	breast:
10	chr10:44185254..44186130-chr10:45360020..45360770,2	K562	blood:
11	chr10:44185118..44187930-chr10:44667702..44670061,3	MCF-7	breast:
12	chr10:44185215..44186124-chr10:44881924..44882633,3	MCF-7	breast:
13	chr10:44185207..44186112-chr10:44349223..44350193,2	MCF-7	breast:
14	chr10:44173211..44175882-chr10:44184314..44186858,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000107562	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10450466	1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[TSI][hapmap];0.84[ASN][1000 genomes]
rs11238621	0.85[ASN][1000 genomes]
rs17154089	1.00[CHB][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs17154099	1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[TSI][hapmap];0.86[ASN][1000 genomes]
rs17154103	1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[ASN][1000 genomes]
rs17154107	0.86[ASN][1000 genomes]
rs17154117	0.85[ASN][1000 genomes]
rs17154128	0.98[ASN][1000 genomes]
rs17154131	0.87[ASW][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[MKK][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3814562	0.85[CHB][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs4491169	1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[TSI][hapmap];0.84[ASN][1000 genomes]
rs4614394	0.84[ASN][1000 genomes]
rs57408979	0.86[ASN][1000 genomes]
rs57806361	0.89[AFR][1000 genomes]
rs57969344	0.86[ASN][1000 genomes]
rs58757312	0.86[ASN][1000 genomes]
rs61697162	0.86[ASN][1000 genomes]
rs73260785	0.84[ASN][1000 genomes]
rs73262706	0.84[ASN][1000 genomes]
rs73264454	0.84[ASN][1000 genomes]
rs73264491	0.86[ASN][1000 genomes]
rs73266505	0.86[ASN][1000 genomes]
rs7893286	0.86[ASN][1000 genomes]
rs7907742	1.00[CHB][hapmap];0.85[CHD][hapmap];0.85[JPT][hapmap];1.00[TSI][hapmap];0.86[ASN][1000 genomes]
rs878478	0.87[ASN][1000 genomes]

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44184200-44186200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
2	chr10:44184600-44185800	Enhancers	Fetal Brain Male	brain
3	chr10:44184600-44186200	Enhancers	Spleen	Spleen
4	chr10:44184600-44186600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
5	chr10:44184800-44185600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
6	chr10:44184800-44185600	Flanking Bivalent TSS/Enh	Fetal Thymus	thymus
7	chr10:44184800-44185600	Flanking Active TSS	NH-A	brain
8	chr10:44184800-44185800	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
9	chr10:44184800-44185800	Bivalent/Poised TSS	Thymus	Thymus
10	chr10:44184800-44185800	Active TSS	A549	lung
11	chr10:44184800-44186000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
12	chr10:44184800-44186000	Active TSS	Primary T killer memory cells from peripheral blood	blood
13	chr10:44184800-44186000	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
14	chr10:44184800-44186200	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
15	chr10:44184800-44186200	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr10:44184800-44186200	Active TSS	Primary T helper naive cells fromperipheralblood	blood
17	chr10:44184800-44186200	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr10:44184800-44186200	Active TSS	Brain Anterior Caudate	brain
19	chr10:44184800-44186200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
20	chr10:44184800-44186200	Active TSS	Brain Substantia Nigra	brain
21	chr10:44184800-44186200	Flanking Active TSS	Colonic Mucosa	Colon
22	chr10:44184800-44186200	Active TSS	Colon Smooth Muscle	Colon
23	chr10:44184800-44186200	Flanking Active TSS	Fetal Muscle Leg	muscle
24	chr10:44184800-44186200	Active TSS	Rectal Mucosa Donor 29	rectum
25	chr10:44184800-44186400	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
26	chr10:44184800-44186400	Flanking Active TSS	Adipose Nuclei	Adipose
27	chr10:44184800-44186800	Active TSS	Placenta Amnion	Placenta Amnion
28	chr10:44185000-44185600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr10:44185000-44185600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
30	chr10:44185000-44185600	Flanking Active TSS	HMEC	breast
31	chr10:44185000-44185600	Flanking Active TSS	NHDF-Ad	bronchial
32	chr10:44185000-44185800	Active TSS	Primary B cells from cord blood	blood
33	chr10:44185000-44185800	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr10:44185000-44185800	Active TSS	Primary T killer naive cells fromperipheralblood	blood
35	chr10:44185000-44185800	Active TSS	Fetal Intestine Large	intestine
36	chr10:44185000-44185800	Active TSS	Lung	lung
37	chr10:44185000-44185800	Active TSS	GM12878-XiMat	blood
38	chr10:44185000-44186000	Active TSS	Primary T helper naive cells from peripheral blood	blood
39	chr10:44185000-44186000	Active TSS	HSMMtube	muscle
40	chr10:44185000-44186200	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
41	chr10:44185000-44186200	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
42	chr10:44185000-44186200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
43	chr10:44185000-44186200	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
44	chr10:44185000-44186200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr10:44185000-44186200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr10:44185000-44186200	Active TSS	Brain Angular Gyrus	brain
47	chr10:44185000-44186200	Active TSS	Brain Cingulate Gyrus	brain
48	chr10:44185000-44186200	Active TSS	Brain Inferior Temporal Lobe	brain
49	chr10:44185000-44186200	Active TSS	Fetal Heart	heart
50	chr10:44185000-44186200	Active TSS	Fetal Kidney	kidney

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