Variant report

Variant	rs4491169
Chromosome Location	chr10:44154099-44154100
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:44144149..44146080-chr10:44152629..44154994,2	K562	blood:
2	chr10:44144089..44145856-chr10:44153637..44156105,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000169740	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10450466	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11238621	0.96[ASN][1000 genomes]
rs17154089	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17154095	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs17154099	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17154102	0.87[AFR][1000 genomes]
rs17154103	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17154107	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17154117	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17154128	0.84[ASN][1000 genomes]
rs17154131	1.00[CHB][hapmap];0.85[JPT][hapmap];0.85[ASN][1000 genomes]
rs17154135	1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[TSI][hapmap];0.84[ASN][1000 genomes]
rs3123663	0.83[ASN][1000 genomes]
rs3128252	0.81[ASN][1000 genomes]
rs3814562	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];0.92[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs41422044	0.82[AFR][1000 genomes]
rs4614393	0.87[AFR][1000 genomes]
rs4614394	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4623849	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs57182212	0.94[ASN][1000 genomes]
rs57401751	0.82[AFR][1000 genomes]
rs57408979	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57895085	0.87[AFR][1000 genomes]
rs57969344	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58585102	0.87[AFR][1000 genomes]
rs58593574	0.93[ASN][1000 genomes]
rs58757312	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60643875	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60933829	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61697162	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73260775	0.87[AFR][1000 genomes]
rs73260776	0.87[AFR][1000 genomes]
rs73260778	0.87[AFR][1000 genomes]
rs73260785	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73260787	0.87[AFR][1000 genomes]
rs73260790	0.90[AFR][1000 genomes]
rs73260791	0.87[AFR][1000 genomes]
rs73260793	0.87[AFR][1000 genomes]
rs73260799	0.87[AFR][1000 genomes]
rs73262703	0.87[AFR][1000 genomes]
rs73262705	0.87[AFR][1000 genomes]
rs73262706	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73262710	0.87[AFR][1000 genomes]
rs73264454	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73264462	0.87[AFR][1000 genomes]
rs73264491	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73264498	0.82[AFR][1000 genomes]
rs73266505	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7893286	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7907742	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs872533	0.82[AFR][1000 genomes]
rs878478	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44153600-44154200	Enhancers	Fetal Stomach	stomach
2	chr10:44153800-44154200	Enhancers	Lung	lung
3	chr10:44154000-44154200	Flanking Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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