Variant report

Variant	rs17154117
Chromosome Location	chr10:44174579-44174580
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:44173211..44175756-chr10:44184314..44186963,2	K562	blood:
2	chr10:44173211..44175882-chr10:44184314..44186858,2	K562	blood:
3	chr10:44173522..44175308-chr10:44181432..44183348,2	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10450466	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11238621	0.98[ASN][1000 genomes]
rs17154089	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17154095	0.88[YRI][hapmap]
rs17154099	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17154103	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17154107	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17154128	0.85[ASN][1000 genomes]
rs17154131	1.00[CHB][hapmap];0.85[JPT][hapmap];0.86[ASN][1000 genomes]
rs17154135	1.00[CHB][hapmap];0.85[JPT][hapmap];0.85[ASN][1000 genomes]
rs3128252	0.86[YRI][hapmap];0.82[ASN][1000 genomes]
rs3814562	1.00[CEU][hapmap];0.85[CHB][hapmap];0.92[JPT][hapmap];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4491169	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4614394	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57182212	0.90[ASN][1000 genomes]
rs57408979	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs57969344	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs58593574	0.89[ASN][1000 genomes]
rs58757312	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs60643875	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60933829	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61697162	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73260785	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73262706	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73264454	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73264491	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73266505	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7893286	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7907742	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs878478	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44163400-44176800	Weak transcription	Right Atrium	heart
2	chr10:44167600-44175200	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr10:44169800-44175200	Weak transcription	Gastric	stomach
4	chr10:44170600-44174600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr10:44170600-44175200	Weak transcription	Left Ventricle	heart
6	chr10:44170600-44176800	Weak transcription	Spleen	Spleen
7	chr10:44172400-44174600	Weak transcription	Rectal Smooth Muscle	rectum
8	chr10:44173800-44177400	Enhancers	Fetal Brain Male	brain
9	chr10:44174000-44175200	Enhancers	Skeletal Muscle Female	skeletal muscle
10	chr10:44174000-44176000	Enhancers	Fetal Brain Female	brain
11	chr10:44174000-44176200	Enhancers	Brain Germinal Matrix	brain
12	chr10:44174000-44177400	Enhancers	Fetal Lung	lung
13	chr10:44174200-44175200	Enhancers	Stomach Smooth Muscle	stomach
14	chr10:44174200-44175600	Enhancers	Esophagus	oesophagus
15	chr10:44174200-44175800	Enhancers	Pancreas	Pancrea
16	chr10:44174200-44177000	Enhancers	Colon Smooth Muscle	Colon
17	chr10:44174200-44177000	Enhancers	Fetal Stomach	stomach
18	chr10:44174200-44177400	Enhancers	Fetal Muscle Leg	muscle
19	chr10:44174400-44175400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr10:44174400-44175400	Enhancers	Stomach Mucosa	stomach
21	chr10:44174400-44175600	Enhancers	Cortex derived primary cultured neurospheres	brain
22	chr10:44174400-44176200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr10:44174400-44184600	Weak transcription	Lung	lung
24	chr10:44174400-44185000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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