Variant report

Variant	rs57408979
Chromosome Location	chr10:44176068-44176069
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10450466	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11238621	0.99[ASN][1000 genomes]
rs17154089	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17154099	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17154103	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17154107	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17154117	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17154128	0.86[ASN][1000 genomes]
rs17154131	0.87[ASN][1000 genomes]
rs17154135	0.86[ASN][1000 genomes]
rs3123663	0.81[ASN][1000 genomes]
rs3128252	0.83[ASN][1000 genomes]
rs3814562	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4491169	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4614394	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57182212	0.91[ASN][1000 genomes]
rs57969344	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58593574	0.90[ASN][1000 genomes]
rs58757312	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60643875	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs60933829	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61697162	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73260785	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73262706	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73264454	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73264491	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73266505	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7893286	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7907742	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs878478	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44163400-44176800	Weak transcription	Right Atrium	heart
2	chr10:44170600-44176800	Weak transcription	Spleen	Spleen
3	chr10:44173800-44177400	Enhancers	Fetal Brain Male	brain
4	chr10:44174000-44176200	Enhancers	Brain Germinal Matrix	brain
5	chr10:44174000-44177400	Enhancers	Fetal Lung	lung
6	chr10:44174200-44177000	Enhancers	Colon Smooth Muscle	Colon
7	chr10:44174200-44177000	Enhancers	Fetal Stomach	stomach
8	chr10:44174200-44177400	Enhancers	Fetal Muscle Leg	muscle
9	chr10:44174400-44176200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr10:44174400-44184600	Weak transcription	Lung	lung
11	chr10:44174400-44185000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr10:44174600-44176200	Enhancers	Rectal Smooth Muscle	rectum
13	chr10:44175000-44176800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr10:44175000-44177000	Enhancers	Adipose Nuclei	Adipose
15	chr10:44175200-44176400	Enhancers	Duodenum Smooth Muscle	Duodenum
16	chr10:44175200-44176800	Enhancers	NHDF-Ad	bronchial
17	chr10:44175200-44177000	Enhancers	Left Ventricle	heart
18	chr10:44175400-44176800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr10:44175600-44176200	Enhancers	Osteobl	bone
20	chr10:44175600-44176400	Enhancers	Skeletal Muscle Female	skeletal muscle
21	chr10:44175600-44176800	Enhancers	Stomach Smooth Muscle	stomach
22	chr10:44175600-44181200	Weak transcription	Right Ventricle	heart
23	chr10:44175800-44176800	Weak transcription	Pancreas	Pancrea
24	chr10:44175800-44176800	Weak transcription	Psoas Muscle	Psoas
25	chr10:44175800-44177000	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr10:44176000-44176400	Weak transcription	Fetal Brain Female	brain
27	chr10:44176000-44176600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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