Variant report

Variant	rs58593574
Chromosome Location	chr10:44118532-44118533
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:44111828..44115534-chr10:44118358..44120756,4	K562	blood:
2	chr10:44115730..44119631-chr10:44140992..44144540,5	K562	blood:

Variant related genes	Relation type
ENSG00000230565	Chromatin interaction
ENSG00000169740	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10450466	0.93[ASN][1000 genomes]
rs11238621	0.89[ASN][1000 genomes]
rs17154089	1.00[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs17154099	0.90[ASN][1000 genomes]
rs17154103	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs17154107	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs17154117	0.89[ASN][1000 genomes]
rs3814562	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs4491169	0.93[ASN][1000 genomes]
rs4614394	0.88[ASN][1000 genomes]
rs57182212	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs57408979	0.90[ASN][1000 genomes]
rs57969344	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs58757312	0.91[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs60643875	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60933829	1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs61697162	0.91[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs73260785	0.93[ASN][1000 genomes]
rs73262706	0.93[ASN][1000 genomes]
rs73264454	0.93[ASN][1000 genomes]
rs73264491	0.90[ASN][1000 genomes]
rs73266505	0.90[ASN][1000 genomes]
rs7893286	0.90[ASN][1000 genomes]
rs7907742	0.90[ASN][1000 genomes]
rs878478	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[ASN][1000 genomes]

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44102800-44118800	Weak transcription	Fetal Heart	heart
2	chr10:44112600-44118800	Weak transcription	Stomach Smooth Muscle	stomach
3	chr10:44113000-44119000	Weak transcription	Pancreas	Pancrea
4	chr10:44113200-44118600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr10:44113200-44118800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr10:44113200-44118800	Weak transcription	Fetal Kidney	kidney
7	chr10:44113200-44118800	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr10:44114800-44118800	Weak transcription	NHDF-Ad	bronchial
9	chr10:44116800-44118600	Flanking Active TSS	Dnd41	blood
10	chr10:44117200-44118600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr10:44117400-44118600	Enhancers	Primary T helper cells PMA-I stimulated	--
12	chr10:44117600-44118600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
13	chr10:44117800-44119000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr10:44118000-44118600	Enhancers	Primary T helper cells fromperipheralblood	blood
15	chr10:44118000-44118600	Weak transcription	K562	blood
16	chr10:44118000-44119400	Active TSS	Liver	Liver
17	chr10:44118400-44118600	Active TSS	Primary T helper naive cells fromperipheralblood	blood
18	chr10:44118400-44118600	Active TSS	Primary T killer memory cells from peripheral blood	blood
19	chr10:44118400-44118600	Flanking Active TSS	Brain Angular Gyrus	brain
20	chr10:44118400-44118600	Flanking Active TSS	Brain Anterior Caudate	brain
21	chr10:44118400-44118600	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
22	chr10:44118400-44118800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
23	chr10:44118400-44118800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
24	chr10:44118400-44118800	Enhancers	Brain Substantia Nigra	brain
25	chr10:44118400-44119000	Active TSS	Brain Inferior Temporal Lobe	brain
26	chr10:44118400-44119200	Active TSS	Duodenum Smooth Muscle	Duodenum
27	chr10:44118400-44119200	Active TSS	Ovary	ovary
28	chr10:44118400-44119400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr10:44118400-44119400	Active TSS	Brain Hippocampus Middle	brain

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