Variant report

Variant	rs17154099
Chromosome Location	chr10:44166188-44166189
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:44158916..44161624-chr10:44163530..44166378,2	MCF-7	breast:
2	chr10:44160745..44162621-chr10:44163515..44166197,2	K562	blood:

Variant related genes	Relation type
ENSG00000228426	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10450466	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11238621	0.99[ASN][1000 genomes]
rs17154089	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17154095	1.00[YRI][hapmap]
rs17154103	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17154107	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17154117	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17154128	0.86[ASN][1000 genomes]
rs17154131	1.00[CHB][hapmap];0.85[JPT][hapmap];0.87[ASN][1000 genomes]
rs17154135	1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[TSI][hapmap];0.86[ASN][1000 genomes]
rs2095539	0.88[AFR][1000 genomes]
rs3123663	0.81[ASN][1000 genomes]
rs3128252	0.86[YRI][hapmap];0.83[ASN][1000 genomes]
rs3814562	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];0.92[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4491169	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4508158	0.86[AFR][1000 genomes]
rs4614394	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57182212	0.91[ASN][1000 genomes]
rs57408979	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57969344	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58593574	0.90[ASN][1000 genomes]
rs58757312	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60643875	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs60933829	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61317009	0.92[AFR][1000 genomes]
rs61697162	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73260785	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73262706	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73264454	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73264465	0.88[AFR][1000 genomes]
rs73264469	0.92[AFR][1000 genomes]
rs73264472	0.92[AFR][1000 genomes]
rs73264485	0.90[AFR][1000 genomes]
rs73264491	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73266503	0.88[AFR][1000 genomes]
rs73266505	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7893286	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7907742	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs878478	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44163200-44167000	Weak transcription	Osteobl	bone
2	chr10:44163200-44167200	Weak transcription	Ovary	ovary
3	chr10:44163200-44167400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr10:44163400-44176800	Weak transcription	Right Atrium	heart

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