Variant report

Variant	rs17154107
Chromosome Location	chr10:44172396-44172397
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10450466	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11238621	0.99[ASN][1000 genomes]
rs17154089	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17154099	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17154103	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17154117	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17154128	0.86[ASN][1000 genomes]
rs17154131	1.00[CHB][hapmap];0.85[JPT][hapmap];0.87[ASN][1000 genomes]
rs17154135	1.00[CHB][hapmap];0.85[JPT][hapmap];0.86[ASN][1000 genomes]
rs3123663	0.81[ASN][1000 genomes]
rs3128252	0.83[ASN][1000 genomes]
rs3814562	1.00[CEU][hapmap];0.85[CHB][hapmap];0.92[JPT][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4491169	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4614394	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57182212	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs57408979	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57969344	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58593574	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs58757312	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60643875	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs60933829	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61697162	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73260785	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73262706	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73264454	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73264491	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73266505	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7893286	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7907742	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs878478	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44163400-44176800	Weak transcription	Right Atrium	heart
2	chr10:44167600-44174200	Weak transcription	Pancreas	Pancrea
3	chr10:44167600-44175200	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr10:44169800-44175200	Weak transcription	Gastric	stomach
5	chr10:44170400-44174200	Weak transcription	Colon Smooth Muscle	Colon
6	chr10:44170600-44173800	Weak transcription	Fetal Brain Male	brain
7	chr10:44170600-44174000	Weak transcription	Fetal Brain Female	brain
8	chr10:44170600-44174000	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr10:44170600-44174200	Weak transcription	Lung	lung
10	chr10:44170600-44174600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr10:44170600-44175200	Weak transcription	Left Ventricle	heart
12	chr10:44170600-44176800	Weak transcription	Spleen	Spleen
13	chr10:44172000-44172600	Enhancers	Esophagus	oesophagus
14	chr10:44172200-44172400	Enhancers	Rectal Smooth Muscle	rectum
15	chr10:44172200-44172400	Enhancers	Stomach Mucosa	stomach

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