The 2.0 version of rSNPBase

Variant report

Variant rs17398689
Chromosome Location chr1:161282859-161282860
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:66 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:161276000-161283800 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
2 chr1:161276200-161283200 Weak transcription Primary hematopoietic stem cells blood
3 chr1:161276200-161283600 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
4 chr1:161276400-161283400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
5 chr1:161276400-161283400 Weak transcription Primary mononuclear cells fromperipheralblood Blood
6 chr1:161276400-161283400 Weak transcription Liver Liver
7 chr1:161276400-161283600 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
8 chr1:161276600-161283400 Weak transcription HUES64 Cell Line embryonic stem cell
9 chr1:161276600-161283400 Weak transcription Primary T killer naive cells fromperipheralblood blood
10 chr1:161276600-161283400 Weak transcription Primary T killer memory cells from peripheral blood blood
11 chr1:161276600-161283400 Weak transcription Right Atrium heart
12 chr1:161276600-161283600 Weak transcription HUES48 Cell Line embryonic stem cell
13 chr1:161276800-161283400 Weak transcription Primary T helper naive cells from peripheral blood blood
14 chr1:161276800-161283400 Weak transcription Brain Angular Gyrus brain
15 chr1:161276800-161283400 Weak transcription Brain Anterior Caudate brain
16 chr1:161277000-161283600 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
17 chr1:161277200-161283000 Weak transcription Brain Inferior Temporal Lobe brain
18 chr1:161277200-161283400 Weak transcription Primary T cells fromperipheralblood blood
19 chr1:161277200-161283400 Weak transcription Primary T helper 17 cells PMA-I stimulated --
20 chr1:161277200-161283400 Weak transcription Primary T helper cells fromperipheralblood blood
21 chr1:161277200-161283400 Weak transcription Esophagus oesophagus
22 chr1:161277200-161283400 Weak transcription Pancreas Pancrea
23 chr1:161277200-161283400 Weak transcription Spleen Spleen
24 chr1:161277200-161283600 Weak transcription Left Ventricle heart
25 chr1:161277400-161283200 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
26 chr1:161277400-161283200 Weak transcription Duodenum Mucosa Duodenum
27 chr1:161277400-161283400 Weak transcription H9 Cell Line embryonic stem cell
28 chr1:161277400-161283400 Weak transcription Primary T helper naive cells fromperipheralblood blood
29 chr1:161277400-161283400 Weak transcription Rectal Mucosa Donor 29 rectum
30 chr1:161278200-161283200 Weak transcription Primary neutrophils fromperipheralblood blood
31 chr1:161278200-161283200 Weak transcription Primary hematopoietic stem cells short term culture blood
32 chr1:161278200-161283400 Weak transcription HUES6 Cell Line embryonic stem cell
33 chr1:161278200-161283400 Weak transcription Primary Natural Killer cells fromperipheralblood blood
34 chr1:161278400-161283000 Weak transcription Dnd41 blood
35 chr1:161278400-161283200 Weak transcription Primary monocytes fromperipheralblood blood
36 chr1:161278400-161283200 Weak transcription Monocytes-CD14+_RO01746 blood
37 chr1:161278400-161283400 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
38 chr1:161278400-161283400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
39 chr1:161278400-161283400 Weak transcription HMEC breast
40 chr1:161278600-161283400 Weak transcription Hela-S3 cervix
41 chr1:161278800-161283400 Weak transcription Muscle Satellite Cultured Cells --
42 chr1:161278800-161283400 Weak transcription Brain Hippocampus Middle brain
43 chr1:161278800-161283400 Weak transcription HSMMtube muscle
44 chr1:161279000-161283000 Weak transcription Breast Myoepithelial Primary Cells Breast
45 chr1:161279000-161283200 Weak transcription iPS-15b Cell Line embryonic stem cell
46 chr1:161279200-161283200 Enhancers HepG2 liver
47 chr1:161279800-161283200 Enhancers K562 blood
48 chr1:161279800-161283400 Weak transcription Duodenum Smooth Muscle Duodenum
49 chr1:161279800-161283600 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
50 chr1:161280000-161283400 Weak transcription H1 Cell Line embryonic stem cell

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Last update: Aug 31, 2015