Variant report

Variant	rs35620439
Chromosome Location	chr1:161349491-161349492
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs10494359	1.00[ASN][1000 genomes]
rs10494360	1.00[ASN][1000 genomes]
rs11801022	1.00[ASN][1000 genomes]
rs11810143	1.00[ASN][1000 genomes]
rs12722986	1.00[ASN][1000 genomes]
rs12741391	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12744234	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12746613	1.00[ASN][1000 genomes]
rs12748656	1.00[ASN][1000 genomes]
rs12749237	1.00[ASN][1000 genomes]
rs12758795	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17394957	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17395595	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17398689	1.00[ASN][1000 genomes]
rs17399583	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17400053	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17400517	1.00[ASN][1000 genomes]
rs34006306	1.00[ASN][1000 genomes]
rs34370781	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34550741	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35046931	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35200803	1.00[ASN][1000 genomes]
rs35825219	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35949692	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36059328	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3845548	1.00[ASN][1000 genomes]
rs4082014	1.00[ASN][1000 genomes]
rs55864322	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55971447	1.00[ASN][1000 genomes]
rs56157533	1.00[ASN][1000 genomes]
rs56199187	1.00[ASN][1000 genomes]
rs61686728	1.00[ASN][1000 genomes]
rs61802846	1.00[ASN][1000 genomes]
rs66535289	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs66579967	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6666989	1.00[ASN][1000 genomes]
rs6671753	1.00[ASN][1000 genomes]
rs6679543	1.00[ASN][1000 genomes]
rs66888136	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67307769	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67418890	1.00[ASN][1000 genomes]
rs71632979	1.00[ASN][1000 genomes]
rs71632995	1.00[ASN][1000 genomes]
rs71639056	1.00[ASN][1000 genomes]
rs71639062	1.00[ASN][1000 genomes]
rs72714962	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72717013	1.00[ASN][1000 genomes]
rs72717016	1.00[ASN][1000 genomes]
rs72717018	1.00[ASN][1000 genomes]
rs72717040	1.00[ASN][1000 genomes]
rs72717048	1.00[ASN][1000 genomes]
rs7515174	1.00[ASN][1000 genomes]
rs7518087	1.00[ASN][1000 genomes]
rs7529225	1.00[ASN][1000 genomes]
rs7529425	1.00[ASN][1000 genomes]
rs7532275	1.00[ASN][1000 genomes]
rs7539468	1.00[ASN][1000 genomes]
rs7552317	1.00[ASN][1000 genomes]
rs867624	1.00[ASN][1000 genomes]
rs9427039	1.00[ASN][1000 genomes]
rs9427059	1.00[ASN][1000 genomes]
rs9427065	1.00[ASN][1000 genomes]
rs9427372	1.00[ASN][1000 genomes]
rs9427387	1.00[ASN][1000 genomes]
rs9427392	1.00[ASN][1000 genomes]
rs9427394	1.00[ASN][1000 genomes]
rs9427398	1.00[ASN][1000 genomes]
rs9427399	1.00[ASN][1000 genomes]
rs9427400	1.00[ASN][1000 genomes]
rs9427401	1.00[ASN][1000 genomes]
rs9427402	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432986	chr1:161221133-161673682	Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv1010776	chr1:161282384-161409218	Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
3	nsv432998	chr1:161335902-161673682	Active TSS Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	62 gene(s)	inside rSNPs	diseases
4	nsv872493	chr1:161339060-161413794	Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
5	nsv433009	chr1:161343927-161639328	Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
6	nsv1005812	chr1:161343951-161548101	Weak transcription Bivalent Enhancer Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
7	nsv535182	chr1:161343951-161548101	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
8	esv2756866	chr1:161344255-161681552	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	62 gene(s)	inside rSNPs	diseases
9	esv2758972	chr1:161344255-161681552	Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	62 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:161327400-161352600	Weak transcription	Lung	lung
2	chr1:161328400-161359000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr1:161328600-161359000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr1:161335000-161356000	Weak transcription	K562	blood
5	chr1:161336600-161351600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr1:161336600-161352200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr1:161336600-161352200	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr1:161336800-161351600	Weak transcription	NHEK	skin
9	chr1:161337800-161356200	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr1:161338000-161351600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr1:161338000-161356000	Weak transcription	GM12878-XiMat	blood
12	chr1:161347000-161351600	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr1:161347000-161352200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr1:161348200-161351600	Weak transcription	A549	lung
15	chr1:161348200-161351600	Weak transcription	HepG2	liver
16	chr1:161349000-161351600	Weak transcription	Placenta	Placenta
17	chr1:161349200-161351400	Weak transcription	Fetal Lung	lung
18	chr1:161349200-161351600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr1:161349200-161351600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr1:161349200-161351600	Weak transcription	Left Ventricle	heart
21	chr1:161349200-161358600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr1:161349400-161351600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr1:161349400-161351600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr1:161349400-161351600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr1:161349400-161351600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr1:161349400-161351600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr1:161349400-161352200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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