Variant report

Variant rs17554640
Chromosome Location chr19:23557809-23557810
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:99 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:23513200-23570400 ZNF genes & repeats hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
2 chr19:23524400-23570200 ZNF genes & repeats Liver Liver
3 chr19:23524600-23570000 ZNF genes & repeats Primary T helper cells fromperipheralblood blood
4 chr19:23544000-23576400 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
5 chr19:23544600-23560600 ZNF genes & repeats IMR90 fetal lung fibroblasts Cell Line lung
6 chr19:23544800-23558000 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Female --
7 chr19:23549000-23560400 Strong transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
8 chr19:23549200-23560800 ZNF genes & repeats Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
9 chr19:23549200-23568600 ZNF genes & repeats Duodenum Mucosa Duodenum
10 chr19:23549200-23570200 ZNF genes & repeats Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
11 chr19:23549200-23577000 ZNF genes & repeats H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
12 chr19:23549600-23576000 Weak transcription Hela-S3 cervix
13 chr19:23549800-23562400 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
14 chr19:23551600-23576400 ZNF genes & repeats Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
15 chr19:23552200-23562000 Weak transcription Right Ventricle heart
16 chr19:23552400-23562600 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
17 chr19:23552800-23576000 ZNF genes & repeats Dnd41 blood
18 chr19:23553000-23560600 ZNF genes & repeats H9 Derived Neuron Cultured Cells ES cell derived
19 chr19:23553000-23560600 ZNF genes & repeats Primary T helper cells PMA-I stimulated --
20 chr19:23553000-23560800 ZNF genes & repeats Fetal Brain Female brain
21 chr19:23553000-23576400 ZNF genes & repeats Primary hematopoietic stem cells blood
22 chr19:23553000-23576800 ZNF genes & repeats Monocytes-CD14+_RO01746 blood
23 chr19:23553000-23577000 ZNF genes & repeats Primary hematopoietic stem cells short term culture blood
24 chr19:23553200-23558600 ZNF genes & repeats Primary monocytes fromperipheralblood blood
25 chr19:23553200-23560600 ZNF genes & repeats Foreskin Melanocyte Primary Cells skin03 Skin
26 chr19:23553400-23559200 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
27 chr19:23553600-23559800 Strong transcription Primary T cells effector/memory enriched fromperipheralblood blood
28 chr19:23554200-23567600 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
29 chr19:23554600-23558000 Strong transcription Muscle Satellite Cultured Cells --
30 chr19:23554600-23558200 Strong transcription Fetal Lung lung
31 chr19:23554800-23562000 Strong transcription Rectal Mucosa Donor 29 rectum
32 chr19:23555000-23558400 ZNF genes & repeats Sigmoid Colon Sigmoid Colon
33 chr19:23555600-23562200 Weak transcription Stomach Smooth Muscle stomach
34 chr19:23555600-23562600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
35 chr19:23555600-23562600 Weak transcription Psoas Muscle Psoas
36 chr19:23555600-23576800 Weak transcription H9 Cell Line embryonic stem cell
37 chr19:23555800-23558000 Strong transcription Primary Natural Killer cells fromperipheralblood blood
38 chr19:23555800-23560000 Weak transcription Brain Hippocampus Middle brain
39 chr19:23555800-23561800 Weak transcription Esophagus oesophagus
40 chr19:23555800-23562400 Weak transcription Spleen Spleen
41 chr19:23555800-23562600 Weak transcription Gastric stomach
42 chr19:23556000-23558000 Strong transcription Adipose Nuclei Adipose
43 chr19:23556000-23558000 Weak transcription Small Intestine intestine
44 chr19:23556000-23558400 Weak transcription iPS-15b Cell Line embryonic stem cell
45 chr19:23556000-23558600 Strong transcription Primary T helper naive cells fromperipheralblood blood
46 chr19:23556000-23562000 Weak transcription Brain Angular Gyrus brain
47 chr19:23556000-23562400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
48 chr19:23556000-23566600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
49 chr19:23556600-23558400 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
50 chr19:23556600-23558400 Weak transcription Primary T helper memory cells from peripheral blood 1 blood

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