Variant report

Variant rs295405
Chromosome Location chr19:23515529-23515530
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:65 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:23494400-23518200 Weak transcription Placenta Amnion Placenta Amnion
2 chr19:23500400-23516600 Weak transcription Right Ventricle heart
3 chr19:23506000-23522000 ZNF genes & repeats Adipose Nuclei Adipose
4 chr19:23506000-23548400 ZNF genes & repeats Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
5 chr19:23506400-23522200 ZNF genes & repeats Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
6 chr19:23506600-23518400 Weak transcription Brain Substantia Nigra brain
7 chr19:23507400-23516600 Weak transcription Placenta Placenta
8 chr19:23508200-23517000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
9 chr19:23508400-23518200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
10 chr19:23508400-23518400 Weak transcription Colon Smooth Muscle Colon
11 chr19:23508600-23518400 Weak transcription Brain Inferior Temporal Lobe brain
12 chr19:23510800-23522600 ZNF genes & repeats Pancreatic Islets Pancreatic Islet
13 chr19:23511000-23522800 ZNF genes & repeats Fetal Lung lung
14 chr19:23511000-23523400 ZNF genes & repeats Liver Liver
15 chr19:23511200-23518200 Weak transcription Colonic Mucosa Colon
16 chr19:23512000-23522000 ZNF genes & repeats Fetal Brain Female brain
17 chr19:23512000-23523400 ZNF genes & repeats Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
18 chr19:23512200-23521400 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
19 chr19:23512400-23520000 ZNF genes & repeats H1 Derived Mesenchymal Stem Cells ES cell derived
20 chr19:23512400-23540400 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
21 chr19:23512400-23548400 ZNF genes & repeats H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
22 chr19:23512600-23516200 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
23 chr19:23512600-23516600 Weak transcription HUES64 Cell Line embryonic stem cell
24 chr19:23512600-23519600 ZNF genes & repeats H9 Derived Neuron Cultured Cells ES cell derived
25 chr19:23512600-23520000 ZNF genes & repeats Ovary ovary
26 chr19:23512800-23516400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
27 chr19:23513200-23517200 Strong transcription Rectal Smooth Muscle rectum
28 chr19:23513200-23517400 Strong transcription HSMM muscle
29 chr19:23513200-23570400 ZNF genes & repeats hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
30 chr19:23513400-23517000 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
31 chr19:23513400-23518000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
32 chr19:23513400-23522200 ZNF genes & repeats Duodenum Mucosa Duodenum
33 chr19:23513600-23527400 Weak transcription Osteobl bone
34 chr19:23513800-23517000 ZNF genes & repeats Skeletal Muscle Female skeletal muscle
35 chr19:23513800-23517400 ZNF genes & repeats Primary B cells from cord blood blood
36 chr19:23513800-23520400 ZNF genes & repeats Brain Germinal Matrix brain
37 chr19:23513800-23521800 ZNF genes & repeats Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
38 chr19:23514000-23516400 Weak transcription Cortex derived primary cultured neurospheres brain
39 chr19:23514200-23515800 ZNF genes & repeats IMR90 fetal lung fibroblasts Cell Line lung
40 chr19:23514200-23516000 Strong transcription Left Ventricle heart
41 chr19:23514200-23517200 ZNF genes & repeats Sigmoid Colon Sigmoid Colon
42 chr19:23514200-23519000 Strong transcription Stomach Smooth Muscle stomach
43 chr19:23514200-23519600 ZNF genes & repeats Fetal Muscle Trunk muscle
44 chr19:23514200-23519800 ZNF genes & repeats Aorta Aorta
45 chr19:23514200-23521000 ZNF genes & repeats Primary hematopoietic stem cells blood
46 chr19:23514400-23515600 Strong transcription Fetal Kidney kidney
47 chr19:23514400-23518200 Weak transcription HSMMtube muscle
48 chr19:23514400-23518600 Weak transcription Muscle Satellite Cultured Cells --
49 chr19:23514400-23519000 Weak transcription Fetal Heart heart
50 chr19:23514600-23516600 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain

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