Variant report

Variant rs295401
Chromosome Location chr19:23517828-23517829
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:88 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:23494400-23518200 Weak transcription Placenta Amnion Placenta Amnion
2 chr19:23506000-23522000 ZNF genes & repeats Adipose Nuclei Adipose
3 chr19:23506000-23548400 ZNF genes & repeats Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
4 chr19:23506400-23522200 ZNF genes & repeats Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
5 chr19:23506600-23518400 Weak transcription Brain Substantia Nigra brain
6 chr19:23508400-23518200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
7 chr19:23508400-23518400 Weak transcription Colon Smooth Muscle Colon
8 chr19:23508600-23518400 Weak transcription Brain Inferior Temporal Lobe brain
9 chr19:23510800-23522600 ZNF genes & repeats Pancreatic Islets Pancreatic Islet
10 chr19:23511000-23522800 ZNF genes & repeats Fetal Lung lung
11 chr19:23511000-23523400 ZNF genes & repeats Liver Liver
12 chr19:23511200-23518200 Weak transcription Colonic Mucosa Colon
13 chr19:23512000-23522000 ZNF genes & repeats Fetal Brain Female brain
14 chr19:23512000-23523400 ZNF genes & repeats Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
15 chr19:23512200-23521400 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
16 chr19:23512400-23520000 ZNF genes & repeats H1 Derived Mesenchymal Stem Cells ES cell derived
17 chr19:23512400-23540400 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
18 chr19:23512400-23548400 ZNF genes & repeats H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
19 chr19:23512600-23519600 ZNF genes & repeats H9 Derived Neuron Cultured Cells ES cell derived
20 chr19:23512600-23520000 ZNF genes & repeats Ovary ovary
21 chr19:23513200-23570400 ZNF genes & repeats hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
22 chr19:23513400-23518000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
23 chr19:23513400-23522200 ZNF genes & repeats Duodenum Mucosa Duodenum
24 chr19:23513600-23527400 Weak transcription Osteobl bone
25 chr19:23513800-23520400 ZNF genes & repeats Brain Germinal Matrix brain
26 chr19:23513800-23521800 ZNF genes & repeats Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
27 chr19:23514200-23519000 Strong transcription Stomach Smooth Muscle stomach
28 chr19:23514200-23519600 ZNF genes & repeats Fetal Muscle Trunk muscle
29 chr19:23514200-23519800 ZNF genes & repeats Aorta Aorta
30 chr19:23514200-23521000 ZNF genes & repeats Primary hematopoietic stem cells blood
31 chr19:23514400-23518200 Weak transcription HSMMtube muscle
32 chr19:23514400-23518600 Weak transcription Muscle Satellite Cultured Cells --
33 chr19:23514400-23519000 Weak transcription Fetal Heart heart
34 chr19:23514600-23518400 Weak transcription Brain Angular Gyrus brain
35 chr19:23515000-23520000 ZNF genes & repeats Fetal Muscle Leg muscle
36 chr19:23515200-23520400 ZNF genes & repeats Fetal Intestine Large intestine
37 chr19:23515400-23519400 Strong transcription Rectal Mucosa Donor 29 rectum
38 chr19:23515400-23520400 ZNF genes & repeats Rectal Mucosa Donor 31 rectum
39 chr19:23515400-23522400 ZNF genes & repeats Primary hematopoietic stem cells short term culture blood
40 chr19:23515400-23523000 ZNF genes & repeats Monocytes-CD14+_RO01746 blood
41 chr19:23515800-23522600 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Female --
42 chr19:23516000-23518400 Weak transcription Skeletal Muscle Male skeletal muscle
43 chr19:23516200-23520200 ZNF genes & repeats hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
44 chr19:23516400-23519000 Weak transcription HepG2 liver
45 chr19:23516400-23520000 ZNF genes & repeats Cortex derived primary cultured neurospheres brain
46 chr19:23516400-23520600 Strong transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
47 chr19:23516400-23522800 ZNF genes & repeats Primary T cells from cord blood blood
48 chr19:23516600-23518200 Strong transcription ES-UCSF4 Cell Line embryonic stem cell
49 chr19:23516600-23518400 Strong transcription Placenta Placenta
50 chr19:23516600-23519400 Strong transcription Right Ventricle heart

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