Variant report

Variant rs295406
Chromosome Location chr19:23514491-23514492
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:63 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:23494400-23518200 Weak transcription Placenta Amnion Placenta Amnion
2 chr19:23500400-23516600 Weak transcription Right Ventricle heart
3 chr19:23506000-23522000 ZNF genes & repeats Adipose Nuclei Adipose
4 chr19:23506000-23548400 ZNF genes & repeats Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
5 chr19:23506400-23515000 Weak transcription Brain Anterior Caudate brain
6 chr19:23506400-23522200 ZNF genes & repeats Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
7 chr19:23506600-23518400 Weak transcription Brain Substantia Nigra brain
8 chr19:23507400-23516600 Weak transcription Placenta Placenta
9 chr19:23508200-23517000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
10 chr19:23508400-23518200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
11 chr19:23508400-23518400 Weak transcription Colon Smooth Muscle Colon
12 chr19:23508600-23518400 Weak transcription Brain Inferior Temporal Lobe brain
13 chr19:23510800-23514800 ZNF genes & repeats Duodenum Smooth Muscle Duodenum
14 chr19:23510800-23522600 ZNF genes & repeats Pancreatic Islets Pancreatic Islet
15 chr19:23511000-23522800 ZNF genes & repeats Fetal Lung lung
16 chr19:23511000-23523400 ZNF genes & repeats Liver Liver
17 chr19:23511200-23515400 Weak transcription Skeletal Muscle Male skeletal muscle
18 chr19:23511200-23518200 Weak transcription Colonic Mucosa Colon
19 chr19:23512000-23522000 ZNF genes & repeats Fetal Brain Female brain
20 chr19:23512000-23523400 ZNF genes & repeats Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
21 chr19:23512200-23521400 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
22 chr19:23512400-23520000 ZNF genes & repeats H1 Derived Mesenchymal Stem Cells ES cell derived
23 chr19:23512400-23540400 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
24 chr19:23512400-23548400 ZNF genes & repeats H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
25 chr19:23512600-23516200 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
26 chr19:23512600-23516600 Weak transcription HUES64 Cell Line embryonic stem cell
27 chr19:23512600-23519600 ZNF genes & repeats H9 Derived Neuron Cultured Cells ES cell derived
28 chr19:23512600-23520000 ZNF genes & repeats Ovary ovary
29 chr19:23512800-23514600 ZNF genes & repeats Ganglion Eminence derived primary cultured neurospheres brain
30 chr19:23512800-23515400 Weak transcription Brain Hippocampus Middle brain
31 chr19:23512800-23516400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
32 chr19:23513200-23515200 Weak transcription Fetal Intestine Large intestine
33 chr19:23513200-23517200 Strong transcription Rectal Smooth Muscle rectum
34 chr19:23513200-23517400 Strong transcription HSMM muscle
35 chr19:23513200-23570400 ZNF genes & repeats hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
36 chr19:23513400-23515400 Strong transcription Rectal Mucosa Donor 31 rectum
37 chr19:23513400-23517000 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
38 chr19:23513400-23518000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
39 chr19:23513400-23522200 ZNF genes & repeats Duodenum Mucosa Duodenum
40 chr19:23513600-23527400 Weak transcription Osteobl bone
41 chr19:23513800-23514600 ZNF genes & repeats Dnd41 blood
42 chr19:23513800-23517000 ZNF genes & repeats Skeletal Muscle Female skeletal muscle
43 chr19:23513800-23517400 ZNF genes & repeats Primary B cells from cord blood blood
44 chr19:23513800-23520400 ZNF genes & repeats Brain Germinal Matrix brain
45 chr19:23513800-23521800 ZNF genes & repeats Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
46 chr19:23514000-23515400 Weak transcription Fetal Brain Male brain
47 chr19:23514000-23516400 Weak transcription Cortex derived primary cultured neurospheres brain
48 chr19:23514200-23514600 Strong transcription Breast Myoepithelial Primary Cells Breast
49 chr19:23514200-23514600 ZNF genes & repeats Primary hematopoietic stem cells short term culture blood
50 chr19:23514200-23514600 ZNF genes & repeats Brain Angular Gyrus brain

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