Variant report

Variant	rs2732606
Chromosome Location	chr17:44291365-44291366
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:44256443..44258068-chr17:44289991..44291605,2	K562	blood:
2	chr17:44268608..44272753-chr17:44287651..44292221,9	K562	blood:
3	chr17:44267849..44274041-chr17:44289393..44293083,6	K562	blood:
4	chr17:44269986..44273675-chr17:44289063..44291645,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000214401	Chromatin interaction
ENSG00000120071	Chromatin interaction

Extended variants
information (count: 942 )
Associated
traits (count: 20 )

rSNPs within LD-proxies of this variant (count:272)

rs_ID	r²[population]
rs10221243	0.83[EUR][1000 genomes]
rs10514901	0.93[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10514903	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10514904	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11079733	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1117253	0.86[AMR][1000 genomes]
rs1122380	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1122381	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12150087	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12150127	0.86[AMR][1000 genomes]
rs12150344	0.86[AMR][1000 genomes]
rs12150551	0.86[AMR][1000 genomes]
rs12150558	0.86[AMR][1000 genomes]
rs12150611	0.86[AMR][1000 genomes]
rs12150625	0.86[AMR][1000 genomes]
rs12150627	0.86[AMR][1000 genomes]
rs12150628	0.86[AMR][1000 genomes]
rs1468240	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1468241	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1476554	0.86[AMR][1000 genomes]
rs1706725	0.82[EUR][1000 genomes]
rs17575507	1.00[CEU][hapmap]
rs17575683	0.86[AMR][1000 genomes]
rs17575773	0.86[AMR][1000 genomes]
rs17575822	0.86[AMR][1000 genomes]
rs17575850	0.86[AMR][1000 genomes]
rs17576165	0.86[AMR][1000 genomes]
rs17576200	0.86[AMR][1000 genomes]
rs17576631	0.83[AMR][1000 genomes]
rs17576695	0.89[AMR][1000 genomes]
rs17576709	0.88[AMR][1000 genomes]
rs17576779	0.89[AMR][1000 genomes]
rs17576842	0.93[AMR][1000 genomes]
rs17576870	0.93[AMR][1000 genomes]
rs17576954	0.93[AMR][1000 genomes]
rs17576989	0.93[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs17577024	0.93[AMR][1000 genomes]
rs17577052	0.93[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs17577094	0.93[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17577159	0.93[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs17577313	0.93[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs17577369	0.91[AMR][1000 genomes]
rs17577447	0.93[AMR][1000 genomes]
rs17577496	0.93[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs17577650	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17577877	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17577954	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17577975	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17659731	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17659743	0.86[AMR][1000 genomes]
rs17659881	0.86[AMR][1000 genomes]
rs17659953	0.86[AMR][1000 genomes]
rs17660017	0.86[AMR][1000 genomes]
rs17660065	0.86[AMR][1000 genomes]
rs17660132	0.84[AMR][1000 genomes]
rs17660167	0.86[AMR][1000 genomes]
rs17660228	0.86[AMR][1000 genomes]
rs17660251	0.86[AMR][1000 genomes]
rs17660294	0.84[AMR][1000 genomes]
rs17660337	0.86[AMR][1000 genomes]
rs17660398	0.86[AMR][1000 genomes]
rs17660464	0.89[AMR][1000 genomes]
rs17660488	0.89[AMR][1000 genomes]
rs17660595	0.93[AMR][1000 genomes]
rs17660847	0.93[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs17660865	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs17660907	0.93[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs17660936	0.93[AMR][1000 genomes]
rs17661015	0.93[AMR][1000 genomes]
rs17661027	0.93[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs17661045	0.93[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs17661141	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17661348	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17661385	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17661428	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17664048	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1819040	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1918786	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1918787	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1918794	0.81[AMR][1000 genomes]
rs1966345	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2141298	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2266497	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2316953	0.86[AMR][1000 genomes]
rs2316954	0.86[AMR][1000 genomes]
rs2316955	0.86[AMR][1000 genomes]
rs2429449	0.82[AMR][1000 genomes]
rs2469914	0.81[AMR][1000 genomes]
rs2532229	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2532233	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2532239	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2532276	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2532307	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2532411	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2532412	0.84[AMR][1000 genomes]
rs2532416	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2532417	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2532418	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2532419	0.82[AMR][1000 genomes]
rs2532423	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2668645	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2668653	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2668662	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2668665	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2668668	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2668670	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2668691	0.81[AMR][1000 genomes]
rs2668692	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2668694	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2668695	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2696445	0.88[AMR][1000 genomes]
rs2696566	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2696568	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2696569	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2696609	0.97[EUR][1000 genomes]
rs2696610	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2696633	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2696635	0.84[AMR][1000 genomes]
rs2732601	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2732605	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2732628	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2732629	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2732630	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2732631	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2732715	0.88[EUR][1000 genomes]
rs2838	0.86[AMR][1000 genomes]
rs2942186	0.81[AMR][1000 genomes]
rs2942187	0.86[AMR][1000 genomes]
rs3087534	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3110331	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3912060	0.86[AMR][1000 genomes]
rs3912061	0.86[AMR][1000 genomes]
rs3912062	0.83[AMR][1000 genomes]
rs3912063	0.86[AMR][1000 genomes]
rs4383188	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4471723	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4548919	0.93[AMR][1000 genomes]
rs4581739	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs55653937	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs55669501	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs55672516	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs55686102	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs55692232	0.86[AMR][1000 genomes]
rs55744103	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs55780786	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs55794067	0.93[AMR][1000 genomes]
rs55802590	0.93[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs55825513	0.89[AMR][1000 genomes]
rs55831516	0.86[AMR][1000 genomes]
rs55864131	0.86[AMR][1000 genomes]
rs55885063	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs55900347	0.89[AMR][1000 genomes]
rs55909047	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs55929190	0.86[AMR][1000 genomes]
rs55947022	0.86[AMR][1000 genomes]
rs55955207	0.83[AMR][1000 genomes]
rs55972730	0.86[AMR][1000 genomes]
rs55987700	0.86[AMR][1000 genomes]
rs56041778	0.86[AMR][1000 genomes]
rs56100031	0.86[AMR][1000 genomes]
rs56119705	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs56240678	0.89[AMR][1000 genomes]
rs56257094	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs56273589	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56318865	0.86[AMR][1000 genomes]
rs56323408	0.86[AMR][1000 genomes]
rs62060792	0.86[AMR][1000 genomes]
rs62060793	0.86[AMR][1000 genomes]
rs62060794	0.86[AMR][1000 genomes]
rs62060795	0.86[AMR][1000 genomes]
rs62060796	0.86[AMR][1000 genomes]
rs62060797	0.86[AMR][1000 genomes]
rs62060798	0.86[AMR][1000 genomes]
rs62060799	0.86[AMR][1000 genomes]
rs62060800	0.86[AMR][1000 genomes]
rs62060801	0.86[AMR][1000 genomes]
rs62060802	0.86[AMR][1000 genomes]
rs62060809	0.84[AMR][1000 genomes]
rs62060810	0.86[AMR][1000 genomes]
rs62060812	0.86[AMR][1000 genomes]
rs62060834	0.86[AMR][1000 genomes]
rs62060835	0.86[AMR][1000 genomes]
rs62060836	0.86[AMR][1000 genomes]
rs62060837	0.81[AMR][1000 genomes]
rs62060838	0.86[AMR][1000 genomes]
rs62060839	0.86[AMR][1000 genomes]
rs62060840	0.86[AMR][1000 genomes]
rs62060841	0.86[AMR][1000 genomes]
rs62060842	0.83[AMR][1000 genomes]
rs62060844	0.84[AMR][1000 genomes]
rs62060845	0.86[AMR][1000 genomes]
rs62060846	0.86[AMR][1000 genomes]
rs62060847	0.86[AMR][1000 genomes]
rs62060850	0.86[AMR][1000 genomes]
rs62060851	0.86[AMR][1000 genomes]
rs62060852	0.86[AMR][1000 genomes]
rs62060853	0.86[AMR][1000 genomes]
rs62060855	0.86[AMR][1000 genomes]
rs62060856	0.86[AMR][1000 genomes]
rs62060858	0.86[AMR][1000 genomes]
rs62060859	0.86[AMR][1000 genomes]
rs62061764	0.86[AMR][1000 genomes]
rs62061766	0.84[AMR][1000 genomes]
rs62061767	0.84[AMR][1000 genomes]
rs62061771	0.86[AMR][1000 genomes]
rs62061772	0.86[AMR][1000 genomes]
rs62061788	0.86[AMR][1000 genomes]
rs62061789	0.86[AMR][1000 genomes]
rs62061790	0.86[AMR][1000 genomes]
rs62061791	0.84[AMR][1000 genomes]
rs62061793	0.86[AMR][1000 genomes]
rs62061795	0.88[AMR][1000 genomes]
rs62061796	0.89[AMR][1000 genomes]
rs62061798	0.89[AMR][1000 genomes]
rs62061799	0.88[AMR][1000 genomes]
rs62061802	0.89[AMR][1000 genomes]
rs62061803	0.89[AMR][1000 genomes]
rs62061807	0.88[AMR][1000 genomes]
rs62061808	0.89[AMR][1000 genomes]
rs62061809	0.93[AMR][1000 genomes]
rs62061810	0.93[AMR][1000 genomes]
rs62061811	0.93[AMR][1000 genomes]
rs62061812	0.93[AMR][1000 genomes]
rs62061814	0.93[AMR][1000 genomes]
rs62061815	0.93[AMR][1000 genomes]
rs62061816	0.93[AMR][1000 genomes]
rs62061817	0.93[AMR][1000 genomes]
rs62061818	0.89[AMR][1000 genomes]
rs62061820	0.88[AMR][1000 genomes]
rs62061821	0.91[AMR][1000 genomes]
rs62061822	0.93[AMR][1000 genomes]
rs62061823	0.93[AMR][1000 genomes]
rs62061824	0.93[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62061845	0.82[AMR][1000 genomes]
rs62061847	0.93[AMR][1000 genomes]
rs62061848	0.93[AMR][1000 genomes]
rs62061849	0.91[AMR][1000 genomes]
rs62061850	0.93[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62061851	0.93[AMR][1000 genomes]
rs62061852	0.93[AMR][1000 genomes]
rs62061853	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62061854	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62061855	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62061856	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62061858	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62061859	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62063163	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62063164	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62063165	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62063166	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62063171	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62063172	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62063174	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62063200	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62063201	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62063202	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62063203	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62063207	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62063208	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62063212	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62073098	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6503457	0.83[EUR][1000 genomes]
rs7207582	0.83[EUR][1000 genomes]
rs727425	0.93[AMR][1000 genomes]
rs73984689	0.91[AMR][1000 genomes]
rs8070942	0.83[EUR][1000 genomes]
rs974291	0.86[AMR][1000 genomes]
rs974292	0.86[AMR][1000 genomes]
rs974293	0.86[AMR][1000 genomes]
rs974294	0.86[AMR][1000 genomes]
rs974295	0.86[AMR][1000 genomes]
rs9915547	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:670 , 50 per page) page: 1 2 3 4 5 6 7 ... 14

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817315	chr17:43651731-44351152	Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	nsv529777	chr17:43653227-44351644	Weak transcription Enhancers Genic enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
3	nsv1067695	chr17:43655747-44351152	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
4	nsv529378	chr17:43655747-44351152	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
5	nsv529778	chr17:43675408-44351152	Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
6	nsv529780	chr17:43706686-44485971	Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
7	nsv817460	chr17:43706886-44351152	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
8	nsv529278	chr17:43706886-44694283	Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
9	nsv534157	chr17:43717703-44345038	Enhancers Strong transcription Active TSS Bivalent Enhancer Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
10	nsv529794	chr17:43717703-44351152	Weak transcription Strong transcription Bivalent/Poised TSS Active TSS Enhancers Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
11	nsv948604	chr17:43741452-44364056	Strong transcription Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
12	nsv529795	chr17:43751674-44351152	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
13	nsv949112	chr17:43763241-44364056	Weak transcription Transcr. at gene 5' and 3' Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
14	nsv431716	chr17:43893020-44868187	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
15	esv2751685	chr17:44004972-44789317	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
16	esv2751686	chr17:44039564-44364056	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
17	nsv431717	chr17:44075901-44809001	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
18	nsv471698	chr17:44079479-44378253	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
19	nsv431718	chr17:44094463-44873614	Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
20	esv2751687	chr17:44094471-44364056	Enhancers Strong transcription Active TSS Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
21	nsv575144	chr17:44109474-44354796	Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
22	nsv516807	chr17:44109474-44793283	Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
23	nsv431719	chr17:44111853-44364056	Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
24	esv2751688	chr17:44115107-44364056	Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
25	nsv431720	chr17:44115107-44364056	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
26	nsv1063349	chr17:44116860-44435442	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
27	esv2753137	chr17:44116950-44353885	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
28	nsv431723	chr17:44118999-44364056	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
29	nsv575149	chr17:44131305-44350090	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
30	nsv575150	chr17:44131305-44354796	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
31	nsv543359	chr17:44132076-44792529	Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
32	nsv431726	chr17:44135864-44364056	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
33	esv1792966	chr17:44136000-44422977	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
34	nsv529718	chr17:44138513-44694283	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
35	nsv916230	chr17:44138515-44694311	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
36	esv2751689	chr17:44139662-44364056	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
37	esv2751690	chr17:44139662-44364056	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
38	esv2751691	chr17:44139662-44795190	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
39	esv2751692	chr17:44139662-44811116	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
40	esv2751693	chr17:44139682-44364056	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
41	esv2751694	chr17:44139682-44789285	Enhancers Genic enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
42	esv2751695	chr17:44139682-44801340	Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
43	nsv908311	chr17:44140748-44329221	Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
44	nsv470589	chr17:44140748-44350089	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
45	nsv575152	chr17:44140748-44350090	Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
46	nsv908312	chr17:44140748-44354796	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
47	nsv908313	chr17:44140748-44368215	Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
48	nsv908314	chr17:44140748-44375017	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
49	nsv908315	chr17:44140748-44788310	Weak transcription Bivalent/Poised TSS Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
50	nsv543362	chr17:44141175-44792529	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

mRNA abundance (count:20)

SNP	Gene	Cis/trans	Tissue	Source
rs2732606	KIAA1267	cis	uninvolved skin	skin_eQTL
rs2732606	MAPT	cis	Cerebellum	GTEx
rs2732606	LRRC37A3	Cis_chr	lymphoblastoid	RTeQTL
rs2732606	LRRC37A4	Cis_1M	lymphoblastoid	RTeQTL
rs2732606	MAPK8IP1	trans	lymphoblastoid	RTeQTL
rs2732606	KIAA1267	cis	normal skin	skin_eQTL
rs2732606	LRRC37A4	cis	multi-tissue	Pritchard
rs2732606	LOC644246	Cis_1M	lymphoblastoid	RTeQTL
rs2732606	NSF	cis	normal skin	skin_eQTL
rs2732606	ARL17	Cis_1M	lymphoblastoid	RTeQTL
rs2732606	LOC644246///LOC649063	cis	normal skin	skin_eQTL
rs2732606	ARHGAP27	Cis_1M	lymphoblastoid	RTeQTL
rs2732606	FLJ10120	cis	normal skin	skin_eQTL
rs2732606	LOC644246///LOC649063	cis	lesional skin	skin_eQTL
rs2732606	KIAA1267	cis	lesional skin	skin_eQTL
rs2732606	LOC474170	cis	uninvolved skin	skin_eQTL
rs2732606	MAPK8IP1	cis	Cerebellum	GTEx
rs2732606	LRRC37A	cis	Frontal Cortex	GTEx
rs2732606	LOC644246///LOC649063	cis	uninvolved skin	skin_eQTL
rs2732606	LOC644246	cis	uninvolved skin	skin_eQTL

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:44271600-44302200	Weak transcription	Lung	lung
2	chr17:44271800-44291600	Weak transcription	Fetal Muscle Trunk	muscle
3	chr17:44271800-44293400	Weak transcription	Placenta	Placenta
4	chr17:44271800-44302000	Weak transcription	Left Ventricle	heart
5	chr17:44271800-44302200	Weak transcription	Esophagus	oesophagus
6	chr17:44272200-44302000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr17:44272400-44294200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr17:44272400-44295800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr17:44272400-44302000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr17:44272600-44292600	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr17:44272600-44302000	Weak transcription	Primary B cells from peripheral blood	blood
12	chr17:44273600-44292600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr17:44274000-44301600	Weak transcription	HUVEC	blood vessel
14	chr17:44274800-44291600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr17:44277000-44292000	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr17:44277600-44302200	Weak transcription	NH-A	brain
17	chr17:44278600-44302000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr17:44278600-44302000	Weak transcription	Right Atrium	heart
19	chr17:44279600-44292800	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr17:44279600-44301600	Weak transcription	Ovary	ovary
21	chr17:44280600-44301600	Weak transcription	Colonic Mucosa	Colon
22	chr17:44280800-44301600	Weak transcription	Duodenum Mucosa	Duodenum
23	chr17:44281600-44292400	Weak transcription	Gastric	stomach
24	chr17:44281600-44301600	Weak transcription	Pancreas	Pancrea
25	chr17:44282800-44292600	Weak transcription	Primary monocytes fromperipheralblood	blood
26	chr17:44283400-44292400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
27	chr17:44283600-44292600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr17:44283600-44292600	Weak transcription	Primary B cells from cord blood	blood
29	chr17:44283800-44291600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr17:44283800-44291600	Weak transcription	Brain Germinal Matrix	brain
31	chr17:44283800-44292600	Weak transcription	Brain Substantia Nigra	brain
32	chr17:44284000-44292000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr17:44284000-44292000	Weak transcription	Fetal Brain Female	brain
34	chr17:44284000-44292000	Weak transcription	Fetal Lung	lung
35	chr17:44284000-44292400	Weak transcription	Fetal Brain Male	brain
36	chr17:44284000-44292600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr17:44284000-44296800	Weak transcription	Cortex derived primary cultured neurospheres	brain
38	chr17:44284200-44292600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
39	chr17:44284200-44302200	Weak transcription	Primary hematopoietic stem cells	blood
40	chr17:44284400-44292400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr17:44286200-44291400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr17:44286200-44291600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr17:44286200-44292600	Weak transcription	H9 Cell Line	embryonic stem cell
44	chr17:44286200-44302000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
45	chr17:44286200-44302400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr17:44286400-44292600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr17:44286400-44292600	Weak transcription	HMEC	breast
48	chr17:44286400-44295800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
49	chr17:44286600-44291600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
50	chr17:44286600-44292000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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