Variant report

Variant	rs3766630
Chromosome Location	chr1:179035331-179035332
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:179020191..179022614-chr1:179033544..179035749,2	K562	blood:
2	chr1:179035309..179037468-chr1:179043936..179046736,2	K562	blood:
3	chr1:179034554..179037313-chr1:179045802..179048565,2	MCF-7	breast:
4	chr1:179028816..179031241-chr1:179032306..179036401,3	MCF-7	breast:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs16853590	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16853612	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2018786	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2147769	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3766623	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3766625	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3766629	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3766635	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3813639	0.82[AMR][1000 genomes]
rs55669440	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs55699757	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs55854504	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55974004	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56006430	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56032836	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56173043	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56209812	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56999658	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57601259	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs58939863	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72707280	0.84[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs72707281	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72707282	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72707287	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72707288	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72707292	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72707293	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72707294	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72707296	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72709419	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72709423	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72709424	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72709441	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72709445	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7527432	0.82[EUR][1000 genomes]
rs9249	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:179008400-179041000	Weak transcription	Small Intestine	intestine
2	chr1:179008600-179049800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr1:179008600-179049800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr1:179009600-179050400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr1:179025000-179050200	Weak transcription	HUVEC	blood vessel
6	chr1:179025400-179050600	Weak transcription	Fetal Brain Male	brain
7	chr1:179025600-179050000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr1:179025600-179050400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr1:179025800-179050200	Weak transcription	Fetal Heart	heart
10	chr1:179026200-179038400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr1:179027800-179036600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr1:179027800-179042600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr1:179027800-179050600	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr1:179028000-179039000	Strong transcription	Primary T cells from cord blood	blood
15	chr1:179028400-179036400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr1:179028600-179050000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr1:179028600-179050600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr1:179029200-179039600	Strong transcription	Fetal Intestine Large	intestine
19	chr1:179029600-179043200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr1:179030200-179038200	Strong transcription	Duodenum Mucosa	Duodenum
21	chr1:179030800-179038400	Strong transcription	Rectal Mucosa Donor 29	rectum
22	chr1:179031000-179038400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr1:179031200-179039600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr1:179031400-179038000	Strong transcription	K562	blood
25	chr1:179032000-179036400	Strong transcription	Primary B cells from peripheral blood	blood
26	chr1:179032000-179036400	Strong transcription	Primary T helper cells PMA-I stimulated	--
27	chr1:179032400-179038400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr1:179032400-179039000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
29	chr1:179032600-179035400	Strong transcription	Ovary	ovary
30	chr1:179032600-179036200	Strong transcription	HUES48 Cell Line	embryonic stem cell
31	chr1:179032600-179036200	Strong transcription	Aorta	Aorta
32	chr1:179032600-179037600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr1:179032600-179038400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr1:179032600-179038400	Strong transcription	Primary T cells fromperipheralblood	blood
35	chr1:179032600-179038400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr1:179032600-179043200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr1:179032600-179043200	Strong transcription	Fetal Muscle Trunk	muscle
38	chr1:179032800-179035600	Strong transcription	NH-A	brain
39	chr1:179032800-179036000	Strong transcription	Primary B cells from cord blood	blood
40	chr1:179032800-179037000	Strong transcription	Brain Germinal Matrix	brain
41	chr1:179032800-179038200	Strong transcription	Primary T helper cells fromperipheralblood	blood
42	chr1:179032800-179038400	Strong transcription	Placenta	Placenta
43	chr1:179032800-179039000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr1:179032800-179041600	Strong transcription	Primary monocytes fromperipheralblood	blood
45	chr1:179032800-179043600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr1:179033000-179035400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr1:179033000-179036200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr1:179033000-179036200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr1:179033000-179036200	Strong transcription	NHDF-Ad	bronchial
50	chr1:179033000-179036400	Strong transcription	iPS-18 Cell Line	embryonic stem cell

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