Variant report

Variant	rs56032836
Chromosome Location	chr1:179047963-179047964
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:4)
CpG islands
(count:0)
Chromatin interactive
region (count:4)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:4 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SMC3	chr1:179047791-179048780	SK-N-SH	brain:	n/a	n/a
2	CTCF	chr1:179047883-179048897	A549	lung:	n/a	n/a
3	POLR2A	chr1:179044415-179048750	K562	blood:	n/a	n/a
4	CTCF	chr1:179047916-179048756	SK-N-SH	brain:	n/a	n/a

No data

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:178994220..178996110-chr1:179045886..179048493,2	MCF-7	breast:
2	chr1:179034554..179037313-chr1:179045802..179048565,2	MCF-7	breast:
3	chr1:178993998..178998022-chr1:179047729..179049979,3	K562	blood:
4	chr1:178993182..178999783-chr1:179045102..179052535,14	MCF-7	breast:

No data

Variant related genes	Relation type
TOR3A	TF binding region
ENSG00000116199	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs16853590	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16853612	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2018786	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2147769	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2296376	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs3766623	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3766625	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3766629	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3766630	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3766635	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3813639	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3813640	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs45628232	0.82[AMR][1000 genomes]
rs55669440	0.86[EUR][1000 genomes]
rs55699757	0.90[EUR][1000 genomes]
rs55854504	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55974004	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56006430	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56173043	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56209812	0.90[EUR][1000 genomes]
rs56999658	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57601259	0.87[EUR][1000 genomes]
rs58939863	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72707280	0.84[EUR][1000 genomes]
rs72707281	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72707282	0.88[EUR][1000 genomes]
rs72707288	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72707292	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72707293	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72707294	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72707296	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72709419	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72709423	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72709424	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72709441	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72709445	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72709448	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9249	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:179008600-179049800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr1:179008600-179049800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr1:179009600-179050400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr1:179025000-179050200	Weak transcription	HUVEC	blood vessel
5	chr1:179025400-179050600	Weak transcription	Fetal Brain Male	brain
6	chr1:179025600-179050000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr1:179025600-179050400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr1:179025800-179050200	Weak transcription	Fetal Heart	heart
9	chr1:179027800-179050600	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr1:179028600-179050000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr1:179028600-179050600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr1:179033800-179050000	Weak transcription	Esophagus	oesophagus
13	chr1:179034000-179050000	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr1:179034200-179050000	Weak transcription	Colonic Mucosa	Colon
15	chr1:179034200-179050000	Weak transcription	Fetal Kidney	kidney
16	chr1:179035400-179050000	Weak transcription	Fetal Lung	lung
17	chr1:179036200-179049200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr1:179036200-179050200	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr1:179036200-179050800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr1:179036400-179049200	Weak transcription	Primary T helper cells PMA-I stimulated	--
21	chr1:179036400-179050000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr1:179036400-179050200	Weak transcription	Stomach Mucosa	stomach
23	chr1:179036400-179050400	Weak transcription	Right Ventricle	heart
24	chr1:179038400-179049800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr1:179038400-179049800	Weak transcription	HepG2	liver
26	chr1:179038600-179050000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr1:179041600-179050000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
28	chr1:179041600-179050000	Weak transcription	Colon Smooth Muscle	Colon
29	chr1:179041600-179050000	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr1:179041600-179050000	Weak transcription	NHEK	skin
31	chr1:179041600-179050200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr1:179041600-179050200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr1:179041600-179050200	Weak transcription	Brain Substantia Nigra	brain
34	chr1:179041600-179050200	Weak transcription	Fetal Stomach	stomach
35	chr1:179041600-179050600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr1:179041600-179050600	Weak transcription	Lung	lung
37	chr1:179041800-179048200	Weak transcription	Liver	Liver
38	chr1:179041800-179049600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
39	chr1:179041800-179049800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
40	chr1:179041800-179049800	Weak transcription	Pancreas	Pancrea
41	chr1:179041800-179049800	Weak transcription	Skeletal Muscle Male	skeletal muscle
42	chr1:179041800-179050200	Weak transcription	HUES64 Cell Line	embryonic stem cell
43	chr1:179041800-179050200	Weak transcription	Primary neutrophils fromperipheralblood	blood
44	chr1:179041800-179050200	Weak transcription	Spleen	Spleen
45	chr1:179041800-179050400	Weak transcription	Small Intestine	intestine
46	chr1:179041800-179050600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr1:179041800-179050600	Weak transcription	Aorta	Aorta
48	chr1:179042000-179050000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr1:179042000-179050000	Weak transcription	Rectal Smooth Muscle	rectum
50	chr1:179042000-179050000	Weak transcription	Hela-S3	cervix

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