The 2.0 version of rSNPBase

Variant report

Variant rs55974004
Chromosome Location chr1:179011484-179011485
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:97 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:178998400-179027400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
2 chr1:179001600-179017000 Weak transcription Pancreatic Islets Pancreatic Islet
3 chr1:179001800-179016200 Weak transcription Aorta Aorta
4 chr1:179002000-179019200 Weak transcription Adipose Nuclei Adipose
5 chr1:179003800-179025800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
6 chr1:179004200-179024200 Weak transcription Liver Liver
7 chr1:179004400-179012800 Weak transcription Fetal Lung lung
8 chr1:179004400-179013000 Weak transcription Rectal Mucosa Donor 29 rectum
9 chr1:179004400-179019200 Weak transcription Duodenum Mucosa Duodenum
10 chr1:179004400-179024200 Weak transcription Fetal Kidney kidney
11 chr1:179004800-179012200 Weak transcription Spleen Spleen
12 chr1:179004800-179024600 Weak transcription Primary B cells from cord blood blood
13 chr1:179005200-179016400 Weak transcription Left Ventricle heart
14 chr1:179006000-179024200 Weak transcription Sigmoid Colon Sigmoid Colon
15 chr1:179006400-179016200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
16 chr1:179006400-179024800 Weak transcription Rectal Mucosa Donor 31 rectum
17 chr1:179006400-179032400 Weak transcription Esophagus oesophagus
18 chr1:179006800-179024200 Weak transcription Primary T regulatory cells fromperipheralblood blood
19 chr1:179007000-179024200 Weak transcription HUVEC blood vessel
20 chr1:179007400-179016400 Weak transcription Rectal Smooth Muscle rectum
21 chr1:179007600-179012000 Weak transcription Lung lung
22 chr1:179007600-179012200 Weak transcription Pancreas Pancrea
23 chr1:179007600-179024200 Weak transcription Primary Natural Killer cells fromperipheralblood blood
24 chr1:179008000-179019200 Weak transcription Brain Cingulate Gyrus brain
25 chr1:179008000-179033000 Weak transcription Primary T helper 17 cells PMA-I stimulated --
26 chr1:179008200-179013200 Weak transcription Fetal Brain Female brain
27 chr1:179008400-179016400 Weak transcription Skeletal Muscle Male skeletal muscle
28 chr1:179008400-179021600 Weak transcription Monocytes-CD14+_RO01746 blood
29 chr1:179008400-179023600 Weak transcription iPS-20b Cell Line embryonic stem cell
30 chr1:179008400-179033000 Weak transcription Primary mononuclear cells fromperipheralblood Blood
31 chr1:179008400-179041000 Weak transcription Small Intestine intestine
32 chr1:179008600-179012200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
33 chr1:179008600-179013200 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
34 chr1:179008600-179013800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
35 chr1:179008600-179016200 Weak transcription Skeletal Muscle Female skeletal muscle
36 chr1:179008600-179016200 Weak transcription NHLF lung
37 chr1:179008600-179016400 Weak transcription Primary T helper cells PMA-I stimulated --
38 chr1:179008600-179016400 Weak transcription Psoas Muscle Psoas
39 chr1:179008600-179016800 Weak transcription Duodenum Smooth Muscle Duodenum
40 chr1:179008600-179018600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
41 chr1:179008600-179020600 Weak transcription ES-I3 Cell Line embryonic stem cell
42 chr1:179008600-179022200 Weak transcription Brain Inferior Temporal Lobe brain
43 chr1:179008600-179022200 Weak transcription Brain Substantia Nigra brain
44 chr1:179008600-179022200 Weak transcription Stomach Mucosa stomach
45 chr1:179008600-179023600 Weak transcription Primary T helper naive cells fromperipheralblood blood
46 chr1:179008600-179023600 Weak transcription Primary T helper cells fromperipheralblood blood
47 chr1:179008600-179024200 Weak transcription Primary B cells from peripheral blood blood
48 chr1:179008600-179024400 Weak transcription Hela-S3 cervix
49 chr1:179008600-179033000 Weak transcription Brain Angular Gyrus brain
50 chr1:179008600-179035000 Weak transcription Primary T killer memory cells from peripheral blood blood

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Last update: Aug 31, 2015