The 2.0 version of rSNPBase

Variant report

Variant rs57601259
Chromosome Location chr1:178996881-178996882
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:118 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:178994400-178997000 Active TSS HMEC breast
2 chr1:178994600-178997000 Active TSS Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
3 chr1:178994600-178997000 Active TSS NHLF lung
4 chr1:178994600-178997200 Active TSS GM12878-XiMat blood
5 chr1:178995600-178997000 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Male --
6 chr1:178995800-178997000 Flanking Active TSS Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
7 chr1:178995800-178997000 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Female --
8 chr1:178996000-178997000 Flanking Active TSS Primary T helper cells PMA-I stimulated --
9 chr1:178996000-178997000 Flanking Active TSS Rectal Mucosa Donor 29 rectum
10 chr1:178996000-178997400 Flanking Active TSS K562 blood
11 chr1:178996200-178997000 Flanking Active TSS hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
12 chr1:178996200-178997600 Weak transcription Pancreas Pancrea
13 chr1:178996200-178997600 Weak transcription Spleen Spleen
14 chr1:178996200-178997800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
15 chr1:178996200-178998200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
16 chr1:178996200-178998200 Weak transcription Placenta Placenta
17 chr1:178996200-179001200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
18 chr1:178996200-179003200 Weak transcription Gastric stomach
19 chr1:178996200-179009200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
20 chr1:178996400-178997000 Flanking Active TSS Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
21 chr1:178996400-178997000 Enhancers Primary monocytes fromperipheralblood blood
22 chr1:178996400-178997000 Enhancers Primary T helper memory cells from peripheral blood 2 blood
23 chr1:178996400-178997000 Enhancers Cortex derived primary cultured neurospheres brain
24 chr1:178996400-178997000 Flanking Active TSS Foreskin Keratinocyte Primary Cells skin02 Skin
25 chr1:178996400-178997000 Enhancers Brain Anterior Caudate brain
26 chr1:178996400-178997000 Enhancers Brain Cingulate Gyrus brain
27 chr1:178996400-178997000 Enhancers Brain Inferior Temporal Lobe brain
28 chr1:178996400-178997000 Flanking Active TSS Rectal Smooth Muscle rectum
29 chr1:178996400-178997000 Enhancers Skeletal Muscle Female skeletal muscle
30 chr1:178996400-178997000 Flanking Active TSS HepG2 liver
31 chr1:178996400-178997200 Enhancers Primary T regulatory cells fromperipheralblood blood
32 chr1:178996400-178997200 Enhancers Fetal Adrenal Gland Adrenal Gland
33 chr1:178996400-178997200 Enhancers Fetal Intestine Small intestine
34 chr1:178996400-178997400 Enhancers Primary T helper 17 cells PMA-I stimulated --
35 chr1:178996400-178997400 Enhancers Primary T killer memory cells from peripheral blood blood
36 chr1:178996400-178997800 Weak transcription ES-WA7 Cell Line embryonic stem cell
37 chr1:178996400-178998200 Weak transcription H9 Cell Line embryonic stem cell
38 chr1:178996400-178998200 Weak transcription Small Intestine intestine
39 chr1:178996400-178998800 Enhancers Brain Dorsolateral Prefrontal Cortex brain
40 chr1:178996400-178998800 Enhancers Sigmoid Colon Sigmoid Colon
41 chr1:178996400-179000800 Enhancers Primary T cells from cord blood blood
42 chr1:178996400-179001400 Weak transcription Aorta Aorta
43 chr1:178996400-179001800 Enhancers Primary T helper cells fromperipheralblood blood
44 chr1:178996400-179003200 Weak transcription Primary T cells fromperipheralblood blood
45 chr1:178996400-179003200 Weak transcription Esophagus oesophagus
46 chr1:178996400-179006200 Weak transcription Fetal Stomach stomach
47 chr1:178996400-179011200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
48 chr1:178996600-178997000 Active TSS HUES6 Cell Line embryonic stem cell
49 chr1:178996600-178997000 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
50 chr1:178996600-178997000 Enhancers Primary B cells from cord blood blood

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Last update: Aug 31, 2015