The 2.0 version of rSNPBase

Variant report

Variant rs72707281
Chromosome Location chr1:178988142-178988143
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:69 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:178978600-178991000 Weak transcription Aorta Aorta
2 chr1:178978600-178991200 Weak transcription Psoas Muscle Psoas
3 chr1:178985400-178988200 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
4 chr1:178985400-178988200 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
5 chr1:178985600-178988600 Enhancers Foreskin Melanocyte Primary Cells skin01 Skin
6 chr1:178986400-178988200 Active TSS Colonic Mucosa Colon
7 chr1:178986400-178988800 Weak transcription Esophagus oesophagus
8 chr1:178986400-178991000 Weak transcription Gastric stomach
9 chr1:178986400-178991200 Weak transcription Primary hematopoietic stem cells blood
10 chr1:178986400-178994200 Weak transcription Right Atrium heart
11 chr1:178986400-178994200 Weak transcription Spleen Spleen
12 chr1:178986400-178994400 Weak transcription Lung lung
13 chr1:178986600-178989400 Weak transcription Sigmoid Colon Sigmoid Colon
14 chr1:178986600-178991000 Weak transcription Fetal Muscle Trunk muscle
15 chr1:178986600-178991200 Weak transcription Breast Myoepithelial Primary Cells Breast
16 chr1:178986600-178994000 Weak transcription Primary hematopoietic stem cells short term culture blood
17 chr1:178986800-178988400 Active TSS Rectal Mucosa Donor 29 rectum
18 chr1:178986800-178991000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
19 chr1:178986800-178991200 Weak transcription Skeletal Muscle Male skeletal muscle
20 chr1:178986800-178994200 Weak transcription Liver Liver
21 chr1:178987000-178988200 Enhancers Adipose Nuclei Adipose
22 chr1:178987000-178988400 Enhancers Fetal Adrenal Gland Adrenal Gland
23 chr1:178987000-178991000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
24 chr1:178987000-178991000 Weak transcription Skeletal Muscle Female skeletal muscle
25 chr1:178987200-178988200 Enhancers HepG2 liver
26 chr1:178987200-178989800 Enhancers Stomach Mucosa stomach
27 chr1:178987200-178990600 Weak transcription Primary monocytes fromperipheralblood blood
28 chr1:178987200-178990600 Weak transcription Duodenum Smooth Muscle Duodenum
29 chr1:178987200-178991000 Weak transcription Colon Smooth Muscle Colon
30 chr1:178987200-178994200 Weak transcription Fetal Lung lung
31 chr1:178987400-178988200 Enhancers Hela-S3 cervix
32 chr1:178987400-178989000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
33 chr1:178987400-178989000 Weak transcription Rectal Smooth Muscle rectum
34 chr1:178987400-178990400 Weak transcription Brain Angular Gyrus brain
35 chr1:178987400-178990400 Weak transcription A549 lung
36 chr1:178987400-178990400 Weak transcription NHLF lung
37 chr1:178987400-178990600 Weak transcription Cortex derived primary cultured neurospheres brain
38 chr1:178987400-178990600 Weak transcription Brain Cingulate Gyrus brain
39 chr1:178987400-178990600 Weak transcription Brain Inferior Temporal Lobe brain
40 chr1:178987400-178990600 Weak transcription Fetal Heart heart
41 chr1:178987400-178990600 Weak transcription Monocytes-CD14+_RO01746 blood
42 chr1:178987400-178990800 Weak transcription Muscle Satellite Cultured Cells --
43 chr1:178987400-178991000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
44 chr1:178987400-178991000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
45 chr1:178987400-178991000 Weak transcription Brain Anterior Caudate brain
46 chr1:178987400-178991000 Weak transcription Brain Hippocampus Middle brain
47 chr1:178987400-178991000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
48 chr1:178987400-178991000 Weak transcription Stomach Smooth Muscle stomach
49 chr1:178987400-178991000 Weak transcription HSMM muscle
50 chr1:178987400-178991000 Weak transcription HSMMtube muscle

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Last update: Aug 31, 2015