The 2.0 version of rSNPBase

Variant report

Variant rs56999658
Chromosome Location chr1:179032614-179032615
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:123 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:179008000-179033000 Weak transcription Primary T helper 17 cells PMA-I stimulated --
2 chr1:179008400-179033000 Weak transcription Primary mononuclear cells fromperipheralblood Blood
3 chr1:179008400-179041000 Weak transcription Small Intestine intestine
4 chr1:179008600-179033000 Weak transcription Brain Angular Gyrus brain
5 chr1:179008600-179035000 Weak transcription Primary T killer memory cells from peripheral blood blood
6 chr1:179008600-179049800 Weak transcription Primary T helper naive cells from peripheral blood blood
7 chr1:179008600-179049800 Weak transcription Primary T killer naive cells fromperipheralblood blood
8 chr1:179009400-179033000 Weak transcription Gastric stomach
9 chr1:179009600-179050400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
10 chr1:179012200-179033000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
11 chr1:179013400-179033200 Weak transcription Thymus Thymus
12 chr1:179016800-179033000 Weak transcription Spleen Spleen
13 chr1:179016800-179033200 Weak transcription Rectal Smooth Muscle rectum
14 chr1:179017000-179033200 Weak transcription Right Ventricle heart
15 chr1:179018000-179033000 Weak transcription Skeletal Muscle Male skeletal muscle
16 chr1:179018800-179032800 Weak transcription Brain Germinal Matrix brain
17 chr1:179019800-179033200 Weak transcription Brain Cingulate Gyrus brain
18 chr1:179022800-179033000 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
19 chr1:179022800-179033000 Weak transcription Brain Anterior Caudate brain
20 chr1:179023000-179033400 Weak transcription Stomach Mucosa stomach
21 chr1:179024600-179033200 Weak transcription Primary neutrophils fromperipheralblood blood
22 chr1:179025000-179033000 Weak transcription Sigmoid Colon Sigmoid Colon
23 chr1:179025000-179050200 Weak transcription HUVEC blood vessel
24 chr1:179025400-179033000 Weak transcription Brain Substantia Nigra brain
25 chr1:179025400-179033200 Weak transcription Left Ventricle heart
26 chr1:179025400-179050600 Weak transcription Fetal Brain Male brain
27 chr1:179025600-179050000 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
28 chr1:179025600-179050400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
29 chr1:179025800-179032800 Weak transcription Placenta Placenta
30 chr1:179025800-179033000 Weak transcription Brain Hippocampus Middle brain
31 chr1:179025800-179033000 Weak transcription Fetal Thymus thymus
32 chr1:179025800-179050200 Weak transcription Fetal Heart heart
33 chr1:179026000-179033000 Weak transcription Primary Natural Killer cells fromperipheralblood blood
34 chr1:179026000-179033000 Weak transcription Liver Liver
35 chr1:179026000-179033000 Weak transcription Fetal Brain Female brain
36 chr1:179026000-179033200 Weak transcription Primary T regulatory cells fromperipheralblood blood
37 chr1:179026000-179033200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
38 chr1:179026200-179033000 Weak transcription Cortex derived primary cultured neurospheres brain
39 chr1:179026200-179033000 Weak transcription Fetal Lung lung
40 chr1:179026200-179033000 Weak transcription Monocytes-CD14+_RO01746 blood
41 chr1:179026200-179038400 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
42 chr1:179026800-179032800 Weak transcription Primary T helper cells fromperipheralblood blood
43 chr1:179027000-179033000 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
44 chr1:179027000-179033000 Weak transcription Stomach Smooth Muscle stomach
45 chr1:179027800-179033200 Weak transcription Rectal Mucosa Donor 31 rectum
46 chr1:179027800-179036600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
47 chr1:179027800-179042600 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
48 chr1:179027800-179050600 Weak transcription Placenta Amnion Placenta Amnion
49 chr1:179028000-179032800 Weak transcription Primary T helper naive cells fromperipheralblood blood
50 chr1:179028000-179033000 Weak transcription Colon Smooth Muscle Colon

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Last update: Aug 31, 2015