Variant report

Variant	rs55699757
Chromosome Location	chr1:178989981-178989982
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:178989917..178991482-chr1:179028410..179031384,2	K562	blood:
2	chr1:178989810..178992639-chr1:179050262..179052543,2	MCF-7	breast:
3	chr1:178989406..178991304-chr1:179020860..179022775,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000186283	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs16853590	1.00[EUR][1000 genomes]
rs16853612	0.88[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs2018786	0.90[EUR][1000 genomes]
rs2147769	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs3766623	0.90[EUR][1000 genomes]
rs3766625	0.90[EUR][1000 genomes]
rs3766629	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3766630	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3766635	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55669440	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55854504	0.84[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs55974004	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs56006430	0.88[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs56032836	0.90[EUR][1000 genomes]
rs56173043	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56209812	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56999658	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs57601259	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58939863	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72707280	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72707281	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72707282	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72707287	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72707288	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72707292	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72707293	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72707294	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72707296	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72709419	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72709423	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72709424	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72709441	0.88[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs72709445	0.88[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs7527432	0.83[EUR][1000 genomes]
rs9249	0.90[EUR][1000 genomes]

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:178978600-178991000	Weak transcription	Aorta	Aorta
2	chr1:178978600-178991200	Weak transcription	Psoas Muscle	Psoas
3	chr1:178986400-178991000	Weak transcription	Gastric	stomach
4	chr1:178986400-178991200	Weak transcription	Primary hematopoietic stem cells	blood
5	chr1:178986400-178994200	Weak transcription	Right Atrium	heart
6	chr1:178986400-178994200	Weak transcription	Spleen	Spleen
7	chr1:178986400-178994400	Weak transcription	Lung	lung
8	chr1:178986600-178991000	Weak transcription	Fetal Muscle Trunk	muscle
9	chr1:178986600-178991200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr1:178986600-178994000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr1:178986800-178991000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr1:178986800-178991200	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr1:178986800-178994200	Weak transcription	Liver	Liver
14	chr1:178987000-178991000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr1:178987000-178991000	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr1:178987200-178990600	Weak transcription	Primary monocytes fromperipheralblood	blood
17	chr1:178987200-178990600	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr1:178987200-178991000	Weak transcription	Colon Smooth Muscle	Colon
19	chr1:178987200-178994200	Weak transcription	Fetal Lung	lung
20	chr1:178987400-178990400	Weak transcription	Brain Angular Gyrus	brain
21	chr1:178987400-178990400	Weak transcription	A549	lung
22	chr1:178987400-178990400	Weak transcription	NHLF	lung
23	chr1:178987400-178990600	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr1:178987400-178990600	Weak transcription	Brain Cingulate Gyrus	brain
25	chr1:178987400-178990600	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr1:178987400-178990600	Weak transcription	Fetal Heart	heart
27	chr1:178987400-178990600	Weak transcription	Monocytes-CD14+_RO01746	blood
28	chr1:178987400-178990800	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr1:178987400-178991000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr1:178987400-178991000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr1:178987400-178991000	Weak transcription	Brain Anterior Caudate	brain
32	chr1:178987400-178991000	Weak transcription	Brain Hippocampus Middle	brain
33	chr1:178987400-178991000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
34	chr1:178987400-178991000	Weak transcription	Stomach Smooth Muscle	stomach
35	chr1:178987400-178991000	Weak transcription	HSMM	muscle
36	chr1:178987400-178991000	Weak transcription	HSMMtube	muscle
37	chr1:178987400-178991000	Weak transcription	Osteobl	bone
38	chr1:178987400-178991200	Weak transcription	Brain Substantia Nigra	brain
39	chr1:178987400-178994000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr1:178987400-178994200	Weak transcription	Left Ventricle	heart
41	chr1:178987400-178994400	Weak transcription	Fetal Stomach	stomach
42	chr1:178987600-178990400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr1:178987600-178990600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr1:178987600-178991000	Weak transcription	Fetal Muscle Leg	muscle
45	chr1:178988000-178990600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr1:178988200-178990600	Weak transcription	HepG2	liver
47	chr1:178988200-178991000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr1:178988200-178991000	Weak transcription	Adipose Nuclei	Adipose
49	chr1:178988200-178991000	Weak transcription	Ovary	ovary
50	chr1:178988200-178991000	Weak transcription	NHDF-Ad	bronchial

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