The 2.0 version of rSNPBase

Variant report

Variant rs3815885
Chromosome Location chr2:231308047-231308048
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:94 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:231283600-231309200 Weak transcription Stomach Smooth Muscle stomach
2 chr2:231288800-231319000 Weak transcription Fetal Kidney kidney
3 chr2:231288800-231356000 Weak transcription Stomach Mucosa stomach
4 chr2:231289000-231309200 Weak transcription Aorta Aorta
5 chr2:231294200-231309600 Weak transcription Placenta Amnion Placenta Amnion
6 chr2:231294200-231311600 Weak transcription Colon Smooth Muscle Colon
7 chr2:231295200-231309200 Weak transcription Skeletal Muscle Male skeletal muscle
8 chr2:231295800-231309000 Weak transcription Small Intestine intestine
9 chr2:231296000-231309400 Weak transcription Colonic Mucosa Colon
10 chr2:231296000-231310400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
11 chr2:231296200-231308400 Weak transcription Gastric stomach
12 chr2:231296200-231309200 Weak transcription Fetal Stomach stomach
13 chr2:231296200-231309200 Weak transcription Spleen Spleen
14 chr2:231299600-231308200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
15 chr2:231301400-231308400 Weak transcription Rectal Smooth Muscle rectum
16 chr2:231301400-231309200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
17 chr2:231301400-231309200 Weak transcription Lung lung
18 chr2:231301400-231309200 Weak transcription Ovary ovary
19 chr2:231301400-231309200 Weak transcription Pancreas Pancrea
20 chr2:231301400-231314400 Weak transcription Psoas Muscle Psoas
21 chr2:231301800-231309200 Weak transcription Fetal Lung lung
22 chr2:231301800-231312000 Weak transcription HepG2 liver
23 chr2:231301800-231345000 Weak transcription A549 lung
24 chr2:231303200-231317200 Genic enhancers Primary B cells from peripheral blood blood
25 chr2:231304200-231308200 Weak transcription Fetal Intestine Large intestine
26 chr2:231304200-231309200 Weak transcription Right Ventricle heart
27 chr2:231304400-231320800 Weak transcription Brain Hippocampus Middle brain
28 chr2:231306000-231314400 Weak transcription Esophagus oesophagus
29 chr2:231306600-231309200 Weak transcription NH-A brain
30 chr2:231306600-231309400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
31 chr2:231306600-231310400 Weak transcription Skeletal Muscle Female skeletal muscle
32 chr2:231306600-231312000 Strong transcription Primary monocytes fromperipheralblood blood
33 chr2:231306600-231323400 Weak transcription K562 blood
34 chr2:231306800-231311600 Genic enhancers GM12878-XiMat blood
35 chr2:231306800-231311800 Strong transcription Monocytes-CD14+_RO01746 blood
36 chr2:231306800-231318200 Weak transcription Pancreatic Islets Pancreatic Islet
37 chr2:231307200-231308600 Genic enhancers Primary T cells effector/memory enriched fromperipheralblood blood
38 chr2:231307400-231308400 Strong transcription Primary Natural Killer cells fromperipheralblood blood
39 chr2:231307400-231308600 Genic enhancers Primary T regulatory cells fromperipheralblood blood
40 chr2:231307400-231309200 Weak transcription Fetal Muscle Trunk muscle
41 chr2:231307400-231312600 Genic enhancers Primary B cells from cord blood blood
42 chr2:231307400-231317600 Strong transcription Primary hematopoietic stem cells short term culture blood
43 chr2:231307400-231318200 Strong transcription Breast Myoepithelial Primary Cells Breast
44 chr2:231307400-231321800 Strong transcription Liver Liver
45 chr2:231307600-231308400 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
46 chr2:231307600-231308600 Genic enhancers NHLF lung
47 chr2:231307600-231309600 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
48 chr2:231307600-231311400 Strong transcription Thymus Thymus
49 chr2:231307600-231311600 Weak transcription Hela-S3 cervix
50 chr2:231307600-231311800 Strong transcription Fetal Thymus thymus

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Last update: Aug 31, 2015