The 2.0 version of rSNPBase

Variant report

Variant rs55893188
Chromosome Location chr2:231252053-231252054
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:89 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:231212800-231253600 Weak transcription Gastric stomach
2 chr2:231212800-231253600 Weak transcription HMEC breast
3 chr2:231212800-231259200 Weak transcription Small Intestine intestine
4 chr2:231212800-231262400 Weak transcription K562 blood
5 chr2:231220000-231275800 Weak transcription Stomach Mucosa stomach
6 chr2:231222200-231253400 Weak transcription Colonic Mucosa Colon
7 chr2:231222200-231273200 Weak transcription Skeletal Muscle Male skeletal muscle
8 chr2:231223200-231253600 Weak transcription NHLF lung
9 chr2:231223400-231257800 Weak transcription NH-A brain
10 chr2:231223600-231263600 Weak transcription Fetal Kidney kidney
11 chr2:231224200-231254000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
12 chr2:231225200-231268000 Weak transcription Colon Smooth Muscle Colon
13 chr2:231226600-231253800 Weak transcription Fetal Stomach stomach
14 chr2:231226800-231253600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
15 chr2:231226800-231253600 Weak transcription Pancreas Pancrea
16 chr2:231228800-231260000 Strong transcription Primary B cells from peripheral blood blood
17 chr2:231228800-231275600 Weak transcription Psoas Muscle Psoas
18 chr2:231232200-231260400 Weak transcription Fetal Lung lung
19 chr2:231234200-231253600 Weak transcription Esophagus oesophagus
20 chr2:231234200-231274400 Weak transcription Brain Hippocampus Middle brain
21 chr2:231234400-231259400 Weak transcription Fetal Intestine Small intestine
22 chr2:231236800-231260000 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
23 chr2:231237000-231253600 Weak transcription GM12878-XiMat blood
24 chr2:231237000-231264800 Weak transcription HepG2 liver
25 chr2:231237200-231264800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
26 chr2:231238000-231253800 Weak transcription Fetal Muscle Leg muscle
27 chr2:231238200-231253600 Weak transcription Breast Myoepithelial Primary Cells Breast
28 chr2:231238200-231253600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
29 chr2:231238200-231257600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
30 chr2:231238600-231253600 Weak transcription Left Ventricle heart
31 chr2:231240000-231259600 Strong transcription Primary B cells from cord blood blood
32 chr2:231244600-231259400 Strong transcription Primary T helper cells fromperipheralblood blood
33 chr2:231244600-231260000 Strong transcription Monocytes-CD14+_RO01746 blood
34 chr2:231244800-231260000 Strong transcription Primary T cells from cord blood blood
35 chr2:231244800-231260000 Strong transcription Primary mononuclear cells fromperipheralblood Blood
36 chr2:231245000-231260400 Strong transcription Primary Natural Killer cells fromperipheralblood blood
37 chr2:231245200-231265600 Strong transcription Primary T cells fromperipheralblood blood
38 chr2:231245400-231260400 Strong transcription Primary T regulatory cells fromperipheralblood blood
39 chr2:231245800-231266000 Strong transcription Fetal Adrenal Gland Adrenal Gland
40 chr2:231246200-231253600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
41 chr2:231246400-231260200 Strong transcription Placenta Placenta
42 chr2:231247600-231258800 Strong transcription Primary hematopoietic stem cells blood
43 chr2:231247600-231260000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
44 chr2:231248000-231254800 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
45 chr2:231248000-231260000 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
46 chr2:231248000-231260000 Strong transcription Primary T helper cells PMA-I stimulated --
47 chr2:231248000-231262600 Strong transcription Liver Liver
48 chr2:231248000-231265400 Strong transcription Primary T cells effector/memory enriched fromperipheralblood blood
49 chr2:231248000-231274600 Weak transcription ES-I3 Cell Line embryonic stem cell
50 chr2:231248200-231255000 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --

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Last update: Aug 31, 2015