Variant report
Variant | rs56880548 |
---|---|
Chromosome Location | chr13:98173665-98173666 |
allele | G/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs56290996 | 0.90[AFR][1000 genomes] |
rs56380302 | 1.00[AFR][1000 genomes] |
rs57599496 | 0.90[AFR][1000 genomes] |
rs58108137 | 1.00[AFR][1000 genomes] |
rs58380779 | 1.00[AFR][1000 genomes] |
rs59754396 | 1.00[AFR][1000 genomes] |
rs60023497 | 1.00[AFR][1000 genomes] |
rs60109203 | 1.00[AFR][1000 genomes] |
rs61153632 | 1.00[AFR][1000 genomes] |
rs74105070 | 1.00[AFR][1000 genomes] |
rs74105074 | 1.00[AFR][1000 genomes] |
rs74105075 | 1.00[AFR][1000 genomes] |
rs74105078 | 1.00[AFR][1000 genomes] |
rs74105079 | 1.00[AFR][1000 genomes] |
rs74105081 | 1.00[AFR][1000 genomes] |
rs74105084 | 1.00[AFR][1000 genomes] |
rs74105085 | 1.00[AFR][1000 genomes] |
rs74105086 | 1.00[AFR][1000 genomes] |
rs74105087 | 1.00[AFR][1000 genomes] |
rs74105123 | 0.90[AFR][1000 genomes] |
rs74105126 | 0.90[AFR][1000 genomes] |
rs74105128 | 0.90[AFR][1000 genomes] |
rs74105131 | 1.00[AFR][1000 genomes] |
rs74105172 | 1.00[AFR][1000 genomes] |
rs74105175 | 1.00[AFR][1000 genomes] |
rs74105178 | 1.00[AFR][1000 genomes] |
rs74105179 | 1.00[AFR][1000 genomes] |
rs74105182 | 1.00[AFR][1000 genomes] |
rs74105469 | 1.00[AFR][1000 genomes] |
rs74105470 | 1.00[AFR][1000 genomes] |
rs74105471 | 1.00[AFR][1000 genomes] |
rs74105472 | 1.00[AFR][1000 genomes] |
rs74105478 | 1.00[AFR][1000 genomes] |
rs74105488 | 1.00[AFR][1000 genomes] |
rs74105491 | 1.00[AFR][1000 genomes] |
rs74105492 | 1.00[AFR][1000 genomes] |
rs74105495 | 1.00[AFR][1000 genomes] |
rs74106249 | 1.00[AFR][1000 genomes] |
rs74106936 | 0.81[AFR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1139 | chr13:98133793-98178130 | Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
2 | nsv1043113 | chr13:98136208-98485012 | Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
3 | nsv541884 | chr13:98136208-98485012 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr13:98172400-98174000 | Enhancers | Fetal Brain Male | brain |
2 | chr13:98173200-98175600 | Enhancers | HepG2 | liver |