Variant report

Variant	rs57599496
Chromosome Location	chr13:98047317-98047318
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:98047283..98049852-chr13:98064242..98066608,2	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs56290996	0.81[AFR][1000 genomes]
rs56380302	0.90[AFR][1000 genomes]
rs56880548	0.90[AFR][1000 genomes]
rs58108137	0.90[AFR][1000 genomes]
rs58380779	0.90[AFR][1000 genomes]
rs59754396	0.90[AFR][1000 genomes]
rs60023497	0.90[AFR][1000 genomes]
rs60109203	0.90[AFR][1000 genomes]
rs61153632	0.90[AFR][1000 genomes]
rs74105070	0.90[AFR][1000 genomes]
rs74105074	0.90[AFR][1000 genomes]
rs74105075	0.90[AFR][1000 genomes]
rs74105078	0.90[AFR][1000 genomes]
rs74105079	0.90[AFR][1000 genomes]
rs74105081	0.90[AFR][1000 genomes]
rs74105084	0.90[AFR][1000 genomes]
rs74105085	0.90[AFR][1000 genomes]
rs74105086	0.90[AFR][1000 genomes]
rs74105087	0.90[AFR][1000 genomes]
rs74105123	0.81[AFR][1000 genomes]
rs74105126	0.81[AFR][1000 genomes]
rs74105128	0.81[AFR][1000 genomes]
rs74105131	0.90[AFR][1000 genomes]
rs74105169	0.83[AFR][1000 genomes]
rs74105172	0.90[AFR][1000 genomes]
rs74105175	0.90[AFR][1000 genomes]
rs74105178	0.90[AFR][1000 genomes]
rs74105179	0.90[AFR][1000 genomes]
rs74105182	0.90[AFR][1000 genomes]
rs74105469	0.90[AFR][1000 genomes]
rs74105470	0.90[AFR][1000 genomes]
rs74105471	0.90[AFR][1000 genomes]
rs74105472	0.90[AFR][1000 genomes]
rs74105478	0.90[AFR][1000 genomes]
rs74105488	0.90[AFR][1000 genomes]
rs74105491	0.90[AFR][1000 genomes]
rs74105492	0.90[AFR][1000 genomes]
rs74105495	0.90[AFR][1000 genomes]
rs74106249	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832694	chr13:97930561-98137882	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv1038798	chr13:98008467-98068130	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97995400-98050200	Weak transcription	Small Intestine	intestine
2	chr13:98020400-98048000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr13:98022000-98048000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr13:98027800-98048000	Weak transcription	K562	blood
5	chr13:98028000-98056400	Weak transcription	Psoas Muscle	Psoas
6	chr13:98028200-98048000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr13:98028200-98048000	Weak transcription	Fetal Kidney	kidney
8	chr13:98028400-98047600	Weak transcription	HMEC	breast
9	chr13:98037600-98048000	Weak transcription	Aorta	Aorta
10	chr13:98038600-98049400	Weak transcription	Rectal Smooth Muscle	rectum
11	chr13:98039600-98054400	Weak transcription	Primary T cells from cord blood	blood
12	chr13:98040000-98048200	Weak transcription	Right Atrium	heart
13	chr13:98040000-98049800	Weak transcription	Lung	lung
14	chr13:98040200-98049000	Weak transcription	Brain Angular Gyrus	brain
15	chr13:98040200-98049400	Weak transcription	Stomach Smooth Muscle	stomach
16	chr13:98040400-98047800	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr13:98041000-98048200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr13:98041400-98049000	Weak transcription	Brain Cingulate Gyrus	brain
19	chr13:98041400-98049200	Weak transcription	Colon Smooth Muscle	Colon
20	chr13:98041400-98050200	Weak transcription	Fetal Stomach	stomach
21	chr13:98041800-98050800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr13:98042000-98049000	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr13:98042000-98052800	Weak transcription	Fetal Muscle Leg	muscle
24	chr13:98043600-98047800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr13:98043800-98048000	Weak transcription	Brain Anterior Caudate	brain
26	chr13:98044000-98048800	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr13:98044200-98048000	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr13:98044200-98048600	Weak transcription	Stomach Mucosa	stomach
29	chr13:98044400-98047800	Weak transcription	Monocytes-CD14+_RO01746	blood
30	chr13:98044400-98048400	Weak transcription	Primary B cells from cord blood	blood
31	chr13:98044600-98047600	Weak transcription	NHEK	skin
32	chr13:98044600-98047800	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr13:98044600-98048000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr13:98044600-98048000	Weak transcription	Adipose Nuclei	Adipose
35	chr13:98044600-98048000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr13:98044600-98048400	Weak transcription	Primary T helper cells fromperipheralblood	blood
37	chr13:98044600-98049000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr13:98044600-98049000	Weak transcription	Brain Substantia Nigra	brain
39	chr13:98044600-98049400	Weak transcription	Fetal Muscle Trunk	muscle
40	chr13:98044600-98059400	Weak transcription	Left Ventricle	heart
41	chr13:98044800-98047800	Weak transcription	NH-A	brain
42	chr13:98045200-98047800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr13:98045400-98059400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
44	chr13:98045600-98049200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
45	chr13:98046200-98048400	Weak transcription	Placenta	Placenta
46	chr13:98046400-98048600	Weak transcription	Duodenum Mucosa	Duodenum
47	chr13:98046600-98048800	Weak transcription	Primary hematopoietic stem cells	blood
48	chr13:98046600-98049400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr13:98046800-98047600	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr13:98046800-98048400	Enhancers	NHLF	lung

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