Variant report
| Variant | rs74105182 |
|---|---|
| Chromosome Location | chr13:98073838-98073839 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr13:98072792..98075244-chr13:98079241..98080858,2 | K562 | blood: | |
| 2 | chr13:98071364..98074292-chr13:98079358..98081519,2 | K562 | blood: | |
| 3 | chr13:98072727..98076727-chr13:98084018..98087708,5 | MCF-7 | breast: | |
| 4 | chr13:98071956..98074377-chr13:98092594..98095295,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000125249 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:39)
| rs_ID | r2[population] |
|---|---|
| rs56290996 | 0.90[AFR][1000 genomes] |
| rs56380302 | 1.00[AFR][1000 genomes] |
| rs56880548 | 1.00[AFR][1000 genomes] |
| rs57599496 | 0.90[AFR][1000 genomes] |
| rs58108137 | 1.00[AFR][1000 genomes] |
| rs58380779 | 1.00[AFR][1000 genomes] |
| rs59754396 | 1.00[AFR][1000 genomes] |
| rs60023497 | 1.00[AFR][1000 genomes] |
| rs60109203 | 1.00[AFR][1000 genomes] |
| rs61153632 | 1.00[AFR][1000 genomes] |
| rs74105070 | 1.00[AFR][1000 genomes] |
| rs74105074 | 1.00[AFR][1000 genomes] |
| rs74105075 | 1.00[AFR][1000 genomes] |
| rs74105078 | 1.00[AFR][1000 genomes] |
| rs74105079 | 1.00[AFR][1000 genomes] |
| rs74105081 | 1.00[AFR][1000 genomes] |
| rs74105084 | 1.00[AFR][1000 genomes] |
| rs74105085 | 1.00[AFR][1000 genomes] |
| rs74105086 | 1.00[AFR][1000 genomes] |
| rs74105087 | 1.00[AFR][1000 genomes] |
| rs74105123 | 0.90[AFR][1000 genomes] |
| rs74105126 | 0.90[AFR][1000 genomes] |
| rs74105128 | 0.90[AFR][1000 genomes] |
| rs74105131 | 1.00[AFR][1000 genomes] |
| rs74105172 | 1.00[AFR][1000 genomes] |
| rs74105175 | 1.00[AFR][1000 genomes] |
| rs74105178 | 1.00[AFR][1000 genomes] |
| rs74105179 | 1.00[AFR][1000 genomes] |
| rs74105469 | 1.00[AFR][1000 genomes] |
| rs74105470 | 1.00[AFR][1000 genomes] |
| rs74105471 | 1.00[AFR][1000 genomes] |
| rs74105472 | 1.00[AFR][1000 genomes] |
| rs74105478 | 1.00[AFR][1000 genomes] |
| rs74105488 | 1.00[AFR][1000 genomes] |
| rs74105491 | 1.00[AFR][1000 genomes] |
| rs74105492 | 1.00[AFR][1000 genomes] |
| rs74105495 | 1.00[AFR][1000 genomes] |
| rs74106249 | 1.00[AFR][1000 genomes] |
| rs74106936 | 0.81[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv832694 | chr13:97930561-98137882 | ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:98065200-98074800 | Weak transcription | NHDF-Ad | bronchial |
