Variant report

Variant	rs74105172
Chromosome Location	chr13:98055292-98055293
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs56290996	0.90[AFR][1000 genomes]
rs56380302	1.00[AFR][1000 genomes]
rs56880548	1.00[AFR][1000 genomes]
rs57599496	0.90[AFR][1000 genomes]
rs58108137	1.00[AFR][1000 genomes]
rs58380779	1.00[AFR][1000 genomes]
rs59754396	1.00[AFR][1000 genomes]
rs60023497	1.00[AFR][1000 genomes]
rs60109203	1.00[AFR][1000 genomes]
rs61153632	1.00[AFR][1000 genomes]
rs74105070	1.00[AFR][1000 genomes]
rs74105074	1.00[AFR][1000 genomes]
rs74105075	1.00[AFR][1000 genomes]
rs74105078	1.00[AFR][1000 genomes]
rs74105079	1.00[AFR][1000 genomes]
rs74105081	1.00[AFR][1000 genomes]
rs74105084	1.00[AFR][1000 genomes]
rs74105085	1.00[AFR][1000 genomes]
rs74105086	1.00[AFR][1000 genomes]
rs74105087	1.00[AFR][1000 genomes]
rs74105123	0.90[AFR][1000 genomes]
rs74105126	0.90[AFR][1000 genomes]
rs74105128	0.90[AFR][1000 genomes]
rs74105131	1.00[AFR][1000 genomes]
rs74105175	1.00[AFR][1000 genomes]
rs74105178	1.00[AFR][1000 genomes]
rs74105179	1.00[AFR][1000 genomes]
rs74105182	1.00[AFR][1000 genomes]
rs74105469	1.00[AFR][1000 genomes]
rs74105470	1.00[AFR][1000 genomes]
rs74105471	1.00[AFR][1000 genomes]
rs74105472	1.00[AFR][1000 genomes]
rs74105478	1.00[AFR][1000 genomes]
rs74105488	1.00[AFR][1000 genomes]
rs74105491	1.00[AFR][1000 genomes]
rs74105492	1.00[AFR][1000 genomes]
rs74105495	1.00[AFR][1000 genomes]
rs74106249	1.00[AFR][1000 genomes]
rs74106936	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832694	chr13:97930561-98137882	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv1038798	chr13:98008467-98068130	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:98028000-98056400	Weak transcription	Psoas Muscle	Psoas
2	chr13:98044600-98059400	Weak transcription	Left Ventricle	heart
3	chr13:98045400-98059400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr13:98053400-98057000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr13:98054600-98056400	Weak transcription	Fetal Muscle Leg	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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