Variant report

Variant	rs74105472
Chromosome Location	chr13:98108227-98108228
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs56290996	0.90[AFR][1000 genomes]
rs56380302	1.00[AFR][1000 genomes]
rs56880548	1.00[AFR][1000 genomes]
rs57599496	0.90[AFR][1000 genomes]
rs58108137	1.00[AFR][1000 genomes]
rs58380779	1.00[AFR][1000 genomes]
rs59754396	1.00[AFR][1000 genomes]
rs60023497	1.00[AFR][1000 genomes]
rs60109203	1.00[AFR][1000 genomes]
rs61153632	1.00[AFR][1000 genomes]
rs74105070	1.00[AFR][1000 genomes]
rs74105074	1.00[AFR][1000 genomes]
rs74105075	1.00[AFR][1000 genomes]
rs74105078	1.00[AFR][1000 genomes]
rs74105079	1.00[AFR][1000 genomes]
rs74105081	1.00[AFR][1000 genomes]
rs74105084	1.00[AFR][1000 genomes]
rs74105085	1.00[AFR][1000 genomes]
rs74105086	1.00[AFR][1000 genomes]
rs74105087	1.00[AFR][1000 genomes]
rs74105123	0.90[AFR][1000 genomes]
rs74105126	0.90[AFR][1000 genomes]
rs74105128	0.90[AFR][1000 genomes]
rs74105131	1.00[AFR][1000 genomes]
rs74105172	1.00[AFR][1000 genomes]
rs74105175	1.00[AFR][1000 genomes]
rs74105178	1.00[AFR][1000 genomes]
rs74105179	1.00[AFR][1000 genomes]
rs74105182	1.00[AFR][1000 genomes]
rs74105469	1.00[AFR][1000 genomes]
rs74105470	1.00[AFR][1000 genomes]
rs74105471	1.00[AFR][1000 genomes]
rs74105478	1.00[AFR][1000 genomes]
rs74105488	1.00[AFR][1000 genomes]
rs74105491	1.00[AFR][1000 genomes]
rs74105492	1.00[AFR][1000 genomes]
rs74105495	1.00[AFR][1000 genomes]
rs74106249	1.00[AFR][1000 genomes]
rs74106936	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832694	chr13:97930561-98137882	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv562805	chr13:98098982-98108361	Weak transcription Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
3	esv3515307	chr13:98103758-98108517	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	n/a
4	esv3515296	chr13:98103800-98108478	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	n/a
5	esv3515285	chr13:98103807-98108491	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	n/a
6	esv3515273	chr13:98103830-98108438	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	n/a
7	esv3515318	chr13:98103892-98108414	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	n/a
8	esv10543	chr13:98103933-98108402	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
9	nsv562812	chr13:98104902-98108361	Weak transcription Strong transcription ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
10	nsv562817	chr13:98105345-98108361	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	n/a
11	nsv562818	chr13:98105638-98108361	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	n/a
12	nsv562821	chr13:98105888-98108361	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	n/a
13	nsv562823	chr13:98106607-98108361	Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:98087400-98122200	Weak transcription	Gastric	stomach
2	chr13:98087600-98116400	Weak transcription	Esophagus	oesophagus
3	chr13:98087600-98124400	Weak transcription	Pancreas	Pancrea
4	chr13:98088400-98111600	Weak transcription	Psoas Muscle	Psoas
5	chr13:98088400-98116400	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr13:98088600-98112800	Weak transcription	Thymus	Thymus
7	chr13:98088600-98119600	Weak transcription	NH-A	brain
8	chr13:98088800-98111800	Weak transcription	Duodenum Mucosa	Duodenum
9	chr13:98088800-98116400	Weak transcription	Fetal Intestine Small	intestine
10	chr13:98088800-98118000	Weak transcription	HMEC	breast
11	chr13:98088800-98118400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr13:98088800-98119000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr13:98089000-98116400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr13:98089200-98111800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr13:98089200-98111800	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr13:98089200-98116400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr13:98089200-98116400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr13:98089200-98116400	Weak transcription	NHEK	skin
19	chr13:98089200-98126600	Weak transcription	Stomach Smooth Muscle	stomach
20	chr13:98089800-98122800	Weak transcription	Small Intestine	intestine
21	chr13:98090800-98116400	Weak transcription	Aorta	Aorta
22	chr13:98091000-98111400	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr13:98091200-98112800	Weak transcription	Right Ventricle	heart
24	chr13:98091800-98111600	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr13:98091800-98116200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr13:98091800-98116400	Weak transcription	HUVEC	blood vessel
27	chr13:98091800-98123000	Weak transcription	HSMM	muscle
28	chr13:98092000-98110600	Weak transcription	Fetal Heart	heart
29	chr13:98092000-98111800	Weak transcription	Fetal Brain Male	brain
30	chr13:98092000-98115200	Weak transcription	HepG2	liver
31	chr13:98092000-98116400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
32	chr13:98092800-98111600	Weak transcription	Placenta	Placenta
33	chr13:98093600-98111400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr13:98095800-98112200	Weak transcription	Primary monocytes fromperipheralblood	blood
35	chr13:98097400-98112400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
36	chr13:98098200-98116400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr13:98098800-98111600	Weak transcription	Brain Hippocampus Middle	brain
38	chr13:98101200-98117400	Weak transcription	H9 Cell Line	embryonic stem cell
39	chr13:98101400-98111400	Weak transcription	NHDF-Ad	bronchial
40	chr13:98101400-98111600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr13:98101400-98116400	Weak transcription	HUES6 Cell Line	embryonic stem cell
42	chr13:98101400-98116400	Weak transcription	Fetal Stomach	stomach
43	chr13:98101400-98116400	Weak transcription	Ovary	ovary
44	chr13:98101400-98123400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr13:98101600-98116600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
46	chr13:98101800-98111600	Weak transcription	Left Ventricle	heart
47	chr13:98101800-98116400	Weak transcription	HUES64 Cell Line	embryonic stem cell
48	chr13:98101800-98116800	Weak transcription	H1 Cell Line	embryonic stem cell
49	chr13:98102000-98116200	Weak transcription	Fetal Kidney	kidney
50	chr13:98102000-98116600	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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