Variant report

Variant	rs74105075
Chromosome Location	chr13:98081692-98081693
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr13:98081686-98082647	U87	brain:	n/a	n/a
2	POLR2A	chr13:98081533-98081733	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:98080619..98083140-chr13:98084232..98086579,3	K562	blood:
2	chr13:98081401..98083229-chr13:98085571..98087258,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-OXGR1-6	chr13:98081597-98086236	NONHSAT034832

Variant related genes	Relation type
RAP2A	TF binding region
ENSG00000125249	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs56290996	0.90[AFR][1000 genomes]
rs56380302	1.00[AFR][1000 genomes]
rs56880548	1.00[AFR][1000 genomes]
rs57599496	0.90[AFR][1000 genomes]
rs58108137	1.00[AFR][1000 genomes]
rs58380779	1.00[AFR][1000 genomes]
rs59754396	1.00[AFR][1000 genomes]
rs60023497	1.00[AFR][1000 genomes]
rs60109203	1.00[AFR][1000 genomes]
rs61153632	1.00[AFR][1000 genomes]
rs74105070	1.00[AFR][1000 genomes]
rs74105074	1.00[AFR][1000 genomes]
rs74105078	1.00[AFR][1000 genomes]
rs74105079	1.00[AFR][1000 genomes]
rs74105081	1.00[AFR][1000 genomes]
rs74105084	1.00[AFR][1000 genomes]
rs74105085	1.00[AFR][1000 genomes]
rs74105086	1.00[AFR][1000 genomes]
rs74105087	1.00[AFR][1000 genomes]
rs74105123	0.90[AFR][1000 genomes]
rs74105126	0.90[AFR][1000 genomes]
rs74105128	0.90[AFR][1000 genomes]
rs74105131	1.00[AFR][1000 genomes]
rs74105172	1.00[AFR][1000 genomes]
rs74105175	1.00[AFR][1000 genomes]
rs74105178	1.00[AFR][1000 genomes]
rs74105179	1.00[AFR][1000 genomes]
rs74105182	1.00[AFR][1000 genomes]
rs74105469	1.00[AFR][1000 genomes]
rs74105470	1.00[AFR][1000 genomes]
rs74105471	1.00[AFR][1000 genomes]
rs74105472	1.00[AFR][1000 genomes]
rs74105478	1.00[AFR][1000 genomes]
rs74105488	1.00[AFR][1000 genomes]
rs74105491	1.00[AFR][1000 genomes]
rs74105492	1.00[AFR][1000 genomes]
rs74105495	1.00[AFR][1000 genomes]
rs74106249	1.00[AFR][1000 genomes]
rs74106936	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832694	chr13:97930561-98137882	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	esv1791802	chr13:98076911-98096882	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv1804050	chr13:98076911-98096882	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv1794802	chr13:98076911-98106042	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv1797132	chr13:98076911-98106042	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:98076000-98081800	Weak transcription	HSMM	muscle
2	chr13:98076400-98081800	Weak transcription	Fetal Heart	heart
3	chr13:98076400-98081800	Weak transcription	Psoas Muscle	Psoas
4	chr13:98076400-98081800	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr13:98076400-98081800	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr13:98076400-98081800	Weak transcription	NHDF-Ad	bronchial
7	chr13:98076400-98081800	Weak transcription	Osteobl	bone
8	chr13:98076400-98084800	Weak transcription	Esophagus	oesophagus
9	chr13:98076600-98081800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr13:98079200-98081800	Weak transcription	HepG2	liver
11	chr13:98079400-98084200	Weak transcription	Liver	Liver
12	chr13:98080400-98084400	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr13:98081000-98081800	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr13:98081000-98081800	Enhancers	Fetal Brain Male	brain
15	chr13:98081000-98083800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr13:98081000-98084000	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr13:98081200-98081800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr13:98081200-98081800	Enhancers	Brain Anterior Caudate	brain
19	chr13:98081200-98081800	Enhancers	Fetal Kidney	kidney
20	chr13:98081200-98081800	Enhancers	Fetal Lung	lung
21	chr13:98081200-98082800	Active TSS	Pancreatic Islets	Pancreatic Islet
22	chr13:98081200-98083600	Enhancers	Dnd41	blood
23	chr13:98081600-98081800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr13:98081600-98081800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr13:98081600-98081800	Enhancers	Muscle Satellite Cultured Cells	--
26	chr13:98081600-98081800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr13:98081600-98081800	Enhancers	Brain Cingulate Gyrus	brain
28	chr13:98081600-98081800	Enhancers	Brain Hippocampus Middle	brain
29	chr13:98081600-98081800	Enhancers	Brain Inferior Temporal Lobe	brain
30	chr13:98081600-98081800	Enhancers	Brain Substantia Nigra	brain
31	chr13:98081600-98081800	Enhancers	Fetal Muscle Leg	muscle
32	chr13:98081600-98081800	Enhancers	Fetal Stomach	stomach
33	chr13:98081600-98081800	Active TSS	HSMMtube	muscle
34	chr13:98081600-98081800	Enhancers	NH-A	brain
35	chr13:98081600-98081800	Enhancers	NHLF	lung
36	chr13:98081600-98082400	Enhancers	iPS-15b Cell Line	embryonic stem cell
37	chr13:98081600-98082400	Flanking Active TSS	Brain Germinal Matrix	brain
38	chr13:98081600-98082600	Active TSS	Brain Angular Gyrus	brain
39	chr13:98081600-98082600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain

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