Variant report

Variant	rs74105128
Chromosome Location	chr13:98039532-98039533
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:98031666..98034483-chr13:98038323..98040718,2	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs56290996	1.00[AFR][1000 genomes]
rs56380302	0.90[AFR][1000 genomes]
rs56880548	0.90[AFR][1000 genomes]
rs57599496	0.81[AFR][1000 genomes]
rs58108137	0.90[AFR][1000 genomes]
rs58380779	0.90[AFR][1000 genomes]
rs59754396	0.90[AFR][1000 genomes]
rs60023497	0.90[AFR][1000 genomes]
rs60109203	0.90[AFR][1000 genomes]
rs61153632	0.90[AFR][1000 genomes]
rs74105070	0.90[AFR][1000 genomes]
rs74105074	0.90[AFR][1000 genomes]
rs74105075	0.90[AFR][1000 genomes]
rs74105078	0.90[AFR][1000 genomes]
rs74105079	0.90[AFR][1000 genomes]
rs74105081	0.90[AFR][1000 genomes]
rs74105084	0.90[AFR][1000 genomes]
rs74105085	0.90[AFR][1000 genomes]
rs74105086	0.90[AFR][1000 genomes]
rs74105087	0.90[AFR][1000 genomes]
rs74105123	1.00[AFR][1000 genomes]
rs74105126	1.00[AFR][1000 genomes]
rs74105131	0.90[AFR][1000 genomes]
rs74105172	0.90[AFR][1000 genomes]
rs74105175	0.90[AFR][1000 genomes]
rs74105178	0.90[AFR][1000 genomes]
rs74105179	0.90[AFR][1000 genomes]
rs74105182	0.90[AFR][1000 genomes]
rs74105469	0.90[AFR][1000 genomes]
rs74105470	0.90[AFR][1000 genomes]
rs74105471	0.90[AFR][1000 genomes]
rs74105472	0.90[AFR][1000 genomes]
rs74105478	0.90[AFR][1000 genomes]
rs74105488	0.90[AFR][1000 genomes]
rs74105491	0.90[AFR][1000 genomes]
rs74105492	0.90[AFR][1000 genomes]
rs74105495	0.90[AFR][1000 genomes]
rs74106249	0.90[AFR][1000 genomes]
rs74106936	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832694	chr13:97930561-98137882	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv1038798	chr13:98008467-98068130	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97995400-98050200	Weak transcription	Small Intestine	intestine
2	chr13:98002400-98039600	Weak transcription	Spleen	Spleen
3	chr13:98020000-98045600	Weak transcription	Hela-S3	cervix
4	chr13:98020200-98046000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr13:98020400-98048000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr13:98022000-98043400	Weak transcription	Stomach Mucosa	stomach
7	chr13:98022000-98045600	Weak transcription	Colonic Mucosa	Colon
8	chr13:98022000-98048000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr13:98022200-98042600	Weak transcription	Primary T helper cells PMA-I stimulated	--
10	chr13:98022600-98043800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr13:98023400-98041600	Strong transcription	Liver	Liver
12	chr13:98023600-98045400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
13	chr13:98024000-98044600	Weak transcription	GM12878-XiMat	blood
14	chr13:98026400-98045200	Weak transcription	Fetal Brain Male	brain
15	chr13:98026800-98041200	Strong transcription	HepG2	liver
16	chr13:98027200-98040400	Strong transcription	Fetal Lung	lung
17	chr13:98027800-98043800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr13:98027800-98044000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
19	chr13:98027800-98048000	Weak transcription	K562	blood
20	chr13:98028000-98056400	Weak transcription	Psoas Muscle	Psoas
21	chr13:98028200-98046200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr13:98028200-98048000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr13:98028200-98048000	Weak transcription	Fetal Kidney	kidney
24	chr13:98028400-98041000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
25	chr13:98028400-98047600	Weak transcription	HMEC	breast
26	chr13:98028600-98046800	Weak transcription	A549	lung
27	chr13:98029400-98039600	Weak transcription	Lung	lung
28	chr13:98029400-98046800	Weak transcription	NHLF	lung
29	chr13:98029600-98043600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr13:98030200-98039600	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr13:98031800-98042800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr13:98032800-98042000	Strong transcription	Fetal Muscle Leg	muscle
33	chr13:98033400-98039600	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr13:98033400-98042800	Weak transcription	Placenta Amnion	Placenta Amnion
35	chr13:98033800-98039600	Weak transcription	Brain Angular Gyrus	brain
36	chr13:98033800-98039600	Weak transcription	Rectal Mucosa Donor 31	rectum
37	chr13:98033800-98041600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr13:98034400-98039600	Strong transcription	Duodenum Mucosa	Duodenum
39	chr13:98035200-98040800	Weak transcription	Brain Substantia Nigra	brain
40	chr13:98035600-98039600	Weak transcription	Fetal Intestine Large	intestine
41	chr13:98035600-98039800	Weak transcription	HSMM	muscle
42	chr13:98035600-98041200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr13:98035600-98043600	Weak transcription	Primary T helper cells fromperipheralblood	blood
44	chr13:98036600-98039600	Enhancers	Primary hematopoietic stem cells short term culture	blood
45	chr13:98036600-98040400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr13:98036800-98041800	Strong transcription	Fetal Intestine Small	intestine
47	chr13:98037200-98039800	Strong transcription	Rectal Mucosa Donor 29	rectum
48	chr13:98037200-98041000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr13:98037200-98041800	Strong transcription	Fetal Muscle Trunk	muscle
50	chr13:98037400-98039600	Weak transcription	Osteobl	bone

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links