Variant report

Variant	rs74105492
Chromosome Location	chr13:98143528-98143529
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs56290996	0.90[AFR][1000 genomes]
rs56380302	1.00[AFR][1000 genomes]
rs56880548	1.00[AFR][1000 genomes]
rs57599496	0.90[AFR][1000 genomes]
rs58108137	1.00[AFR][1000 genomes]
rs58380779	1.00[AFR][1000 genomes]
rs59754396	1.00[AFR][1000 genomes]
rs60023497	1.00[AFR][1000 genomes]
rs60109203	1.00[AFR][1000 genomes]
rs61153632	1.00[AFR][1000 genomes]
rs74105070	1.00[AFR][1000 genomes]
rs74105074	1.00[AFR][1000 genomes]
rs74105075	1.00[AFR][1000 genomes]
rs74105078	1.00[AFR][1000 genomes]
rs74105079	1.00[AFR][1000 genomes]
rs74105081	1.00[AFR][1000 genomes]
rs74105084	1.00[AFR][1000 genomes]
rs74105085	1.00[AFR][1000 genomes]
rs74105086	1.00[AFR][1000 genomes]
rs74105087	1.00[AFR][1000 genomes]
rs74105123	0.90[AFR][1000 genomes]
rs74105126	0.90[AFR][1000 genomes]
rs74105128	0.90[AFR][1000 genomes]
rs74105131	1.00[AFR][1000 genomes]
rs74105172	1.00[AFR][1000 genomes]
rs74105175	1.00[AFR][1000 genomes]
rs74105178	1.00[AFR][1000 genomes]
rs74105179	1.00[AFR][1000 genomes]
rs74105182	1.00[AFR][1000 genomes]
rs74105469	1.00[AFR][1000 genomes]
rs74105470	1.00[AFR][1000 genomes]
rs74105471	1.00[AFR][1000 genomes]
rs74105472	1.00[AFR][1000 genomes]
rs74105478	1.00[AFR][1000 genomes]
rs74105488	1.00[AFR][1000 genomes]
rs74105491	1.00[AFR][1000 genomes]
rs74105495	1.00[AFR][1000 genomes]
rs74106249	1.00[AFR][1000 genomes]
rs74106936	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1139	chr13:98133793-98178130	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1043113	chr13:98136208-98485012	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv541884	chr13:98136208-98485012	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:98142600-98145200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr13:98143200-98145800	Enhancers	HepG2	liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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