Variant report

Variant	rs74105081
Chromosome Location	chr13:98088557-98088558
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:98088366..98091907-chr13:98092585..98097383,6	K562	blood:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs56290996	0.90[AFR][1000 genomes]
rs56380302	1.00[AFR][1000 genomes]
rs56880548	1.00[AFR][1000 genomes]
rs57599496	0.90[AFR][1000 genomes]
rs58108137	1.00[AFR][1000 genomes]
rs58380779	1.00[AFR][1000 genomes]
rs59754396	1.00[AFR][1000 genomes]
rs60023497	1.00[AFR][1000 genomes]
rs60109203	1.00[AFR][1000 genomes]
rs61153632	1.00[AFR][1000 genomes]
rs74105070	1.00[AFR][1000 genomes]
rs74105074	1.00[AFR][1000 genomes]
rs74105075	1.00[AFR][1000 genomes]
rs74105078	1.00[AFR][1000 genomes]
rs74105079	1.00[AFR][1000 genomes]
rs74105084	1.00[AFR][1000 genomes]
rs74105085	1.00[AFR][1000 genomes]
rs74105086	1.00[AFR][1000 genomes]
rs74105087	1.00[AFR][1000 genomes]
rs74105123	0.90[AFR][1000 genomes]
rs74105126	0.90[AFR][1000 genomes]
rs74105128	0.90[AFR][1000 genomes]
rs74105131	1.00[AFR][1000 genomes]
rs74105172	1.00[AFR][1000 genomes]
rs74105175	1.00[AFR][1000 genomes]
rs74105178	1.00[AFR][1000 genomes]
rs74105179	1.00[AFR][1000 genomes]
rs74105182	1.00[AFR][1000 genomes]
rs74105469	1.00[AFR][1000 genomes]
rs74105470	1.00[AFR][1000 genomes]
rs74105471	1.00[AFR][1000 genomes]
rs74105472	1.00[AFR][1000 genomes]
rs74105478	1.00[AFR][1000 genomes]
rs74105488	1.00[AFR][1000 genomes]
rs74105491	1.00[AFR][1000 genomes]
rs74105492	1.00[AFR][1000 genomes]
rs74105495	1.00[AFR][1000 genomes]
rs74106249	1.00[AFR][1000 genomes]
rs74106936	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832694	chr13:97930561-98137882	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	esv1791802	chr13:98076911-98096882	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv1804050	chr13:98076911-98096882	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv1794802	chr13:98076911-98106042	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv1797132	chr13:98076911-98106042	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:98083400-98088800	Active TSS	GM12878-XiMat	blood
2	chr13:98083800-98088600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr13:98083800-98089200	Active TSS	ES-I3 Cell Line	embryonic stem cell
4	chr13:98084000-98088600	Active TSS	HUES48 Cell Line	embryonic stem cell
5	chr13:98084000-98088800	Active TSS	iPS-20b Cell Line	embryonic stem cell
6	chr13:98084000-98088800	Active TSS	Fetal Kidney	kidney
7	chr13:98084000-98089200	Active TSS	NHLF	lung
8	chr13:98084200-98089000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr13:98084200-98089000	Active TSS	NHDF-Ad	bronchial
10	chr13:98084400-98088600	Active TSS	HUES6 Cell Line	embryonic stem cell
11	chr13:98084400-98088600	Active TSS	Fetal Muscle Leg	muscle
12	chr13:98084400-98088600	Active TSS	Fetal Stomach	stomach
13	chr13:98084400-98088800	Active TSS	H1 Cell Line	embryonic stem cell
14	chr13:98084400-98088800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr13:98084400-98088800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr13:98084400-98088800	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr13:98084400-98089000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr13:98084400-98089200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr13:98084400-98089200	Active TSS	Rectal Mucosa Donor 29	rectum
20	chr13:98084400-98089600	Active TSS	Right Atrium	heart
21	chr13:98084600-98088600	Active TSS	Primary T cells fromperipheralblood	blood
22	chr13:98084600-98088800	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr13:98084600-98088800	Active TSS	HMEC	breast
24	chr13:98084600-98089000	Active TSS	Brain Cingulate Gyrus	brain
25	chr13:98084600-98089200	Active TSS	Ovary	ovary
26	chr13:98084600-98089600	Active TSS	Aorta	Aorta
27	chr13:98084600-98090000	Active TSS	Fetal Brain Female	brain
28	chr13:98084800-98088600	Active TSS	Brain Angular Gyrus	brain
29	chr13:98084800-98088600	Active TSS	Duodenum Smooth Muscle	Duodenum
30	chr13:98084800-98088600	Active TSS	Fetal Intestine Large	intestine
31	chr13:98084800-98088600	Active TSS	NH-A	brain
32	chr13:98084800-98089800	Active TSS	Brain Anterior Caudate	brain
33	chr13:98085400-98088600	Active TSS	K562	blood
34	chr13:98087200-98089200	Flanking Active TSS	Adipose Nuclei	Adipose
35	chr13:98087400-98088600	Active TSS	Placenta	Placenta
36	chr13:98087400-98090400	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr13:98087400-98090400	Weak transcription	Spleen	Spleen
38	chr13:98087400-98101000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr13:98087400-98122200	Weak transcription	Gastric	stomach
40	chr13:98087600-98088600	Weak transcription	Primary B cells from peripheral blood	blood
41	chr13:98087600-98088600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
42	chr13:98087600-98088600	Active TSS	Fetal Brain Male	brain
43	chr13:98087600-98089000	Enhancers	Primary T helper naive cells from peripheral blood	blood
44	chr13:98087600-98089200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
45	chr13:98087600-98089200	Enhancers	Primary T killer memory cells from peripheral blood	blood
46	chr13:98087600-98089600	Flanking Active TSS	Dnd41	blood
47	chr13:98087600-98089800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
48	chr13:98087600-98091200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
49	chr13:98087600-98091200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
50	chr13:98087600-98101200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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