The 2.0 version of rSNPBase

Variant report

Variant rs58380779
Chromosome Location chr13:98119228-98119229
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:95 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr13:98087400-98122200 Weak transcription Gastric stomach
2 chr13:98087600-98124400 Weak transcription Pancreas Pancrea
3 chr13:98088600-98119600 Weak transcription NH-A brain
4 chr13:98089200-98126600 Weak transcription Stomach Smooth Muscle stomach
5 chr13:98089800-98122800 Weak transcription Small Intestine intestine
6 chr13:98091800-98123000 Weak transcription HSMM muscle
7 chr13:98101400-98123400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
8 chr13:98102200-98126400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
9 chr13:98106000-98124200 Weak transcription Cortex derived primary cultured neurospheres brain
10 chr13:98108600-98134600 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
11 chr13:98112000-98126600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
12 chr13:98112200-98125000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
13 chr13:98112600-98119400 Weak transcription Colon Smooth Muscle Colon
14 chr13:98112800-98119600 Weak transcription Skeletal Muscle Male skeletal muscle
15 chr13:98113200-98120400 Weak transcription Fetal Brain Male brain
16 chr13:98113200-98120800 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
17 chr13:98113200-98124200 Weak transcription Spleen Spleen
18 chr13:98113400-98127200 Weak transcription Right Atrium heart
19 chr13:98114000-98119400 Weak transcription Primary T killer naive cells fromperipheralblood blood
20 chr13:98116800-98121400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
21 chr13:98116800-98124800 Weak transcription Fetal Intestine Small intestine
22 chr13:98116800-98126600 Weak transcription Fetal Stomach stomach
23 chr13:98116800-98127200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
24 chr13:98117000-98119600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
25 chr13:98117000-98119600 Weak transcription Primary T helper 17 cells PMA-I stimulated --
26 chr13:98117000-98119800 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
27 chr13:98117000-98120000 Weak transcription Breast Myoepithelial Primary Cells Breast
28 chr13:98117000-98120600 Weak transcription Rectal Mucosa Donor 31 rectum
29 chr13:98117000-98120600 Weak transcription NHEK skin
30 chr13:98117000-98124200 Weak transcription Lung lung
31 chr13:98117000-98124400 Weak transcription Sigmoid Colon Sigmoid Colon
32 chr13:98117000-98126600 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
33 chr13:98117000-98126600 Weak transcription Aorta Aorta
34 chr13:98117000-98130000 Weak transcription iPS-20b Cell Line embryonic stem cell
35 chr13:98117000-98130000 Weak transcription Duodenum Smooth Muscle Duodenum
36 chr13:98117200-98119600 Weak transcription HUES64 Cell Line embryonic stem cell
37 chr13:98117200-98120600 Weak transcription Brain Anterior Caudate brain
38 chr13:98117200-98123000 Weak transcription Brain Germinal Matrix brain
39 chr13:98117200-98126600 Weak transcription Skeletal Muscle Female skeletal muscle
40 chr13:98117400-98119800 Weak transcription Brain Hippocampus Middle brain
41 chr13:98117400-98120600 Weak transcription Psoas Muscle Psoas
42 chr13:98117400-98121200 Weak transcription Muscle Satellite Cultured Cells --
43 chr13:98117400-98122200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
44 chr13:98117400-98123200 Weak transcription iPS-15b Cell Line embryonic stem cell
45 chr13:98117400-98126600 Weak transcription NHDF-Ad bronchial
46 chr13:98117400-98129600 Weak transcription HUES48 Cell Line embryonic stem cell
47 chr13:98117600-98119800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
48 chr13:98117600-98121600 Weak transcription HUVEC blood vessel
49 chr13:98117600-98124000 Weak transcription Placenta Placenta
50 chr13:98117600-98126400 Weak transcription Fetal Kidney kidney

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Last update: Aug 31, 2015