Variant report

Variant	rs6853356
Chromosome Location	chr4:144061829-144061830
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 101 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:100)

rs_ID	r²[population]
rs10000831	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10461277	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10461278	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10461279	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10519679	0.88[EUR][1000 genomes]
rs1108827	0.83[EUR][1000 genomes]
rs11933189	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11935914	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11941742	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11941986	1.00[CHB][hapmap]
rs11945672	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12711407	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13105156	1.00[CHB][hapmap]
rs13105227	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13105258	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13111543	0.88[EUR][1000 genomes]
rs13113118	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13113907	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13130995	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13131510	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[YRI][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13133540	1.00[CHB][hapmap]
rs13140326	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13141368	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13141417	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13145081	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[YRI][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13146448	1.00[CHB][hapmap]
rs17017424	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17679196	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs2102494	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28452225	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28654139	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28797214	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28891127	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs300907	0.81[EUR][1000 genomes]
rs300932	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs300933	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs300937	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs300942	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs300944	0.83[EUR][1000 genomes]
rs300945	0.83[EUR][1000 genomes]
rs300950	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[EUR][1000 genomes]
rs300954	1.00[CHB][hapmap]
rs300955	1.00[CHB][hapmap]
rs34176541	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34198661	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34225955	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34376112	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34461753	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34474130	0.99[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34589296	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34652171	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34770317	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34780033	0.88[EUR][1000 genomes]
rs35021023	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35095943	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35143494	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35305979	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35311425	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35416586	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35549285	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35607189	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35887480	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35909303	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35971728	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35988039	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4554015	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4690751	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4690772	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55693016	0.88[EUR][1000 genomes]
rs55846476	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56085707	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56142323	0.86[EUR][1000 genomes]
rs603861	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs603934	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs604746	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6537143	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6834491	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6842633	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[YRI][hapmap];0.99[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6850423	0.90[AFR][1000 genomes]
rs6857448	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs71610408	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs71610420	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71610422	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71610423	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71610426	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71610427	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71610428	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71610429	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71610431	0.83[EUR][1000 genomes]
rs71610432	0.83[EUR][1000 genomes]
rs726022	0.88[EUR][1000 genomes]
rs7655033	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7661883	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7670050	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7670426	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[YRI][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7674403	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[YRI][hapmap];0.99[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7686023	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[YRI][hapmap];0.99[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9637656	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9994551	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9997167	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034895	chr4:143945139-144079655	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:144061200-144062400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr4:144061400-144062000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr4:144061400-144062400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr4:144061400-144062400	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr4:144061800-144062400	Enhancers	iPS-18 Cell Line	embryonic stem cell

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