The 2.0 version of rSNPBase

Variant report

Variant rs11102477
Chromosome Location chr1:112997988-112997989
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:105 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:112979600-112998600 Weak transcription Right Ventricle heart
2 chr1:112979600-112998600 Weak transcription Spleen Spleen
3 chr1:112981400-113006000 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
4 chr1:112981600-112999000 Weak transcription Brain Substantia Nigra brain
5 chr1:112982000-112998800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
6 chr1:112982600-112998600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
7 chr1:112982800-112998800 Weak transcription Colon Smooth Muscle Colon
8 chr1:112986400-112998600 Weak transcription Aorta Aorta
9 chr1:112987800-112998600 Weak transcription Gastric stomach
10 chr1:112988600-112998200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
11 chr1:112988600-113004200 Weak transcription Fetal Heart heart
12 chr1:112988800-112998200 Weak transcription H9 Cell Line embryonic stem cell
13 chr1:112988800-113008400 Weak transcription A549 lung
14 chr1:112989400-112998200 Weak transcription Skeletal Muscle Female skeletal muscle
15 chr1:112989400-112998800 Weak transcription GM12878-XiMat blood
16 chr1:112989400-112999200 Weak transcription Placenta Amnion Placenta Amnion
17 chr1:112989600-113004000 Weak transcription ES-WA7 Cell Line embryonic stem cell
18 chr1:112990000-113002800 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
19 chr1:112990200-112999000 Weak transcription HepG2 liver
20 chr1:112990400-113001600 Strong transcription iPS-20b Cell Line embryonic stem cell
21 chr1:112990600-112999000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
22 chr1:112990600-113002000 Strong transcription Breast Myoepithelial Primary Cells Breast
23 chr1:112990600-113004600 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
24 chr1:112990800-112998600 Weak transcription Esophagus oesophagus
25 chr1:112991000-112998600 Weak transcription Pancreas Pancrea
26 chr1:112991400-112998800 Weak transcription Pancreatic Islets Pancreatic Islet
27 chr1:112992000-112998200 Weak transcription NHEK skin
28 chr1:112993000-112998400 Weak transcription Brain Hippocampus Middle brain
29 chr1:112993200-112998800 Weak transcription Brain Angular Gyrus brain
30 chr1:112993800-112999000 Weak transcription Stomach Mucosa stomach
31 chr1:112994000-112998600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
32 chr1:112994000-113000200 Strong transcription Fetal Intestine Small intestine
33 chr1:112994200-113002000 Strong transcription Fetal Intestine Large intestine
34 chr1:112994400-112998600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
35 chr1:112994400-113002000 Strong transcription Fetal Muscle Trunk muscle
36 chr1:112994600-112998600 Strong transcription Muscle Satellite Cultured Cells --
37 chr1:112994600-112998800 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
38 chr1:112994600-113008800 Weak transcription Psoas Muscle Psoas
39 chr1:112994800-113000600 Strong transcription ES-UCSF4 Cell Line embryonic stem cell
40 chr1:112994800-113002000 Strong transcription Ganglion Eminence derived primary cultured neurospheres brain
41 chr1:112994800-113008600 Weak transcription Primary T regulatory cells fromperipheralblood blood
42 chr1:112995000-112998800 Strong transcription Foreskin Fibroblast Primary Cells skin01 Skin
43 chr1:112995000-113001600 Strong transcription Fetal Muscle Leg muscle
44 chr1:112995200-113001600 Strong transcription H1 Cell Line embryonic stem cell
45 chr1:112995200-113002200 Strong transcription Rectal Mucosa Donor 31 rectum
46 chr1:112995400-112998800 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
47 chr1:112995400-112999200 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
48 chr1:112995400-112999400 Strong transcription HUVEC blood vessel
49 chr1:112995400-113000200 Strong transcription Left Ventricle heart
50 chr1:112995400-113000400 Strong transcription Brain Germinal Matrix brain

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Last update: Aug 31, 2015