The 2.0 version of rSNPBase

Variant report

Variant rs2780271
Chromosome Location chr1:112990742-112990743
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:96 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:112957600-112997600 Weak transcription Brain Anterior Caudate brain
2 chr1:112959600-112991600 Weak transcription ES-I3 Cell Line embryonic stem cell
3 chr1:112959800-112992800 Weak transcription Fetal Muscle Trunk muscle
4 chr1:112960000-112995200 Weak transcription Stomach Smooth Muscle stomach
5 chr1:112960000-112996800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
6 chr1:112960200-112991600 Weak transcription Hela-S3 cervix
7 chr1:112960400-112991400 Weak transcription HUES6 Cell Line embryonic stem cell
8 chr1:112961200-112995600 Weak transcription Brain Cingulate Gyrus brain
9 chr1:112962000-112990800 Weak transcription Fetal Brain Male brain
10 chr1:112962600-112991600 Weak transcription HUES48 Cell Line embryonic stem cell
11 chr1:112965800-112996200 Weak transcription Placenta Placenta
12 chr1:112967000-112991600 Weak transcription H1 Cell Line embryonic stem cell
13 chr1:112968600-112994800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
14 chr1:112968600-112995400 Weak transcription Cortex derived primary cultured neurospheres brain
15 chr1:112968600-112995600 Weak transcription Colonic Mucosa Colon
16 chr1:112972200-112991400 Weak transcription iPS-18 Cell Line embryonic stem cell
17 chr1:112974000-112997000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
18 chr1:112976200-112994200 Weak transcription Psoas Muscle Psoas
19 chr1:112979600-112990800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
20 chr1:112979600-112998600 Weak transcription Right Ventricle heart
21 chr1:112979600-112998600 Weak transcription Spleen Spleen
22 chr1:112979800-112990800 Weak transcription Duodenum Mucosa Duodenum
23 chr1:112979800-112992000 Weak transcription Brain Angular Gyrus brain
24 chr1:112979800-112992200 Weak transcription Brain Germinal Matrix brain
25 chr1:112981000-112997200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
26 chr1:112981400-112990800 Weak transcription Brain Inferior Temporal Lobe brain
27 chr1:112981400-113006000 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
28 chr1:112981600-112999000 Weak transcription Brain Substantia Nigra brain
29 chr1:112981800-112996600 Weak transcription Liver Liver
30 chr1:112982000-112996800 Weak transcription Rectal Smooth Muscle rectum
31 chr1:112982000-112998800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
32 chr1:112982400-112991600 Weak transcription Fetal Stomach stomach
33 chr1:112982600-112998600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
34 chr1:112982800-112991600 Weak transcription Fetal Lung lung
35 chr1:112982800-112998800 Weak transcription Colon Smooth Muscle Colon
36 chr1:112983200-112991600 Weak transcription Adipose Nuclei Adipose
37 chr1:112984200-112991600 Weak transcription HUES64 Cell Line embryonic stem cell
38 chr1:112984400-112995600 Weak transcription Fetal Kidney kidney
39 chr1:112986400-112998600 Weak transcription Aorta Aorta
40 chr1:112987000-112991600 Weak transcription HMEC breast
41 chr1:112987800-112990800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
42 chr1:112987800-112996800 Weak transcription Duodenum Smooth Muscle Duodenum
43 chr1:112987800-112998600 Weak transcription Gastric stomach
44 chr1:112988000-112991600 Weak transcription Left Ventricle heart
45 chr1:112988000-112993600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
46 chr1:112988000-112994000 Weak transcription Fetal Intestine Small intestine
47 chr1:112988400-112991600 Weak transcription Brain Hippocampus Middle brain
48 chr1:112988600-112990800 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
49 chr1:112988600-112991200 Weak transcription Rectal Mucosa Donor 29 rectum
50 chr1:112988600-112992200 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin

Quick Search:


  
Input of quick search could be:

what's new

Quick links

Copyright © 2015, Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences. All Rights Reserved Feedback
Last update: Aug 31, 2015