The 2.0 version of rSNPBase

Variant report

Variant rs2488789
Chromosome Location chr1:112984692-112984693
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:83 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:112942400-112988200 Weak transcription Small Intestine intestine
2 chr1:112952400-112990600 Weak transcription Esophagus oesophagus
3 chr1:112957400-112986600 Weak transcription NHLF lung
4 chr1:112957600-112997600 Weak transcription Brain Anterior Caudate brain
5 chr1:112959600-112991600 Weak transcription ES-I3 Cell Line embryonic stem cell
6 chr1:112959800-112992800 Weak transcription Fetal Muscle Trunk muscle
7 chr1:112960000-112995200 Weak transcription Stomach Smooth Muscle stomach
8 chr1:112960000-112996800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
9 chr1:112960200-112991600 Weak transcription Hela-S3 cervix
10 chr1:112960400-112991400 Weak transcription HUES6 Cell Line embryonic stem cell
11 chr1:112961200-112995600 Weak transcription Brain Cingulate Gyrus brain
12 chr1:112961800-112986800 Weak transcription HMEC breast
13 chr1:112962000-112990800 Weak transcription Fetal Brain Male brain
14 chr1:112962600-112990400 Weak transcription iPS-20b Cell Line embryonic stem cell
15 chr1:112962600-112991600 Weak transcription HUES48 Cell Line embryonic stem cell
16 chr1:112965800-112986400 Weak transcription NHDF-Ad bronchial
17 chr1:112965800-112996200 Weak transcription Placenta Placenta
18 chr1:112967000-112991600 Weak transcription H1 Cell Line embryonic stem cell
19 chr1:112968600-112986600 Weak transcription NHEK skin
20 chr1:112968600-112987400 Weak transcription Fetal Intestine Large intestine
21 chr1:112968600-112987600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
22 chr1:112968600-112990600 Weak transcription Fetal Muscle Leg muscle
23 chr1:112968600-112994800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
24 chr1:112968600-112995400 Weak transcription Cortex derived primary cultured neurospheres brain
25 chr1:112968600-112995600 Weak transcription Colonic Mucosa Colon
26 chr1:112972200-112991400 Weak transcription iPS-18 Cell Line embryonic stem cell
27 chr1:112973400-112985400 Weak transcription Left Ventricle heart
28 chr1:112973600-112988800 Weak transcription Lung lung
29 chr1:112974000-112997000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
30 chr1:112976200-112994200 Weak transcription Psoas Muscle Psoas
31 chr1:112977600-112986600 Weak transcription NH-A brain
32 chr1:112979400-112988800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
33 chr1:112979600-112990000 Weak transcription Rectal Mucosa Donor 31 rectum
34 chr1:112979600-112990800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
35 chr1:112979600-112998600 Weak transcription Right Ventricle heart
36 chr1:112979600-112998600 Weak transcription Spleen Spleen
37 chr1:112979800-112986000 Weak transcription Muscle Satellite Cultured Cells --
38 chr1:112979800-112986000 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
39 chr1:112979800-112986200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
40 chr1:112979800-112986400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
41 chr1:112979800-112987400 Weak transcription Rectal Mucosa Donor 29 rectum
42 chr1:112979800-112987600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
43 chr1:112979800-112990800 Weak transcription Duodenum Mucosa Duodenum
44 chr1:112979800-112992000 Weak transcription Brain Angular Gyrus brain
45 chr1:112979800-112992200 Weak transcription Brain Germinal Matrix brain
46 chr1:112980000-112988200 Weak transcription GM12878-XiMat blood
47 chr1:112981000-112997200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
48 chr1:112981400-112984800 Strong transcription Osteobl bone
49 chr1:112981400-112985200 Weak transcription Fetal Heart heart
50 chr1:112981400-112987200 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived

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Last update: Aug 31, 2015